Complete genome sequence of a novel grapevine-infecting member of the genus Polerovirus, grapevine polerovirus 1
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | CANDRESSE, Thierry | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | MARAIS, Armelle | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | FAURE, Chantal | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | LEFEBVRE, Marie | |
hal.structure.identifier | Amélioration génétique et adaptation des plantes méditerranéennes et tropicales [UMR AGAP] | |
dc.contributor.author | LACOMBE, Thierry | |
hal.structure.identifier | Amélioration génétique et adaptation des plantes méditerranéennes et tropicales [UMR AGAP] | |
dc.contributor.author | BOURSIQUOT, Jean-Michel | |
dc.date.issued | 2020 | |
dc.identifier.issn | 0304-8608 | |
dc.description.abstractEn | Double-stranded RNAs and total RNAs purified from grapevine (Vitis vinifera) phloem scrapings of two varieties held in the INRAE (France) grapevine germplasm collection were analyzed by high-throughput sequencing. BLAST annota-tion revealed contigs with homology to Polerovirus genus members. The full genome sequence of one isolate (KT) was determined (5651 nucleotides [nt]), and a partial sequence representing about half of the genome was assembled for a second isolate (KS) that was found to share 95% nt sequence identity with the KT isolate. The genome has a typical polerovirus organization, containing six open reading frames (ORFs) as well as a putative additional ORF3a. Based on genome organization and phylogenetic relationships, the new virus belongs to the genus Polerovirus but, similar to the recently described persimmon polerovirus 1, is characterized by a highly divergent coat-protein/readthrough domain. Considering the species demarcation criteria for the family Luteoviridae, these two isolates, together with a closely related sequence recently deposited in the GenBank database (LC507098), represent a new Polerovirus species for which the name “Grapevine polerovirus 1” is proposed. | |
dc.language.iso | en | |
dc.publisher | Springer Verlag | |
dc.subject | genome | |
dc.subject | santé des plantes | |
dc.subject | virus phytopathogène | |
dc.subject | Polerovirus | |
dc.subject | sequence génomique | |
dc.subject | sequençage haut débit | |
dc.subject | vitis vinifera | |
dc.subject | grapevine polerovirus 1 | |
dc.subject | pathologie végétale | |
dc.subject | vigne | |
dc.title.en | Complete genome sequence of a novel grapevine-infecting member of the genus Polerovirus, grapevine polerovirus 1 | |
dc.type | Article de revue | |
dc.identifier.doi | 10.1007/s00705-020-04640-4 | |
dc.subject.hal | Sciences du Vivant [q-bio] | |
dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie | |
bordeaux.journal | Archives of Virology | |
bordeaux.page | 1683-1685 | |
bordeaux.volume | 165 | |
bordeaux.issue | 7 | |
bordeaux.peerReviewed | oui | |
hal.identifier | hal-02565509 | |
hal.version | 1 | |
hal.popular | non | |
hal.audience | Internationale | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-02565509v1 | |
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