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An Improved Assembly of the Diploid ‘Regina’ Sweet Cherry Genome

hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorLE DANTEC, Loïck
hal.structure.identifierEcophysiologie et Génomique Fonctionnelle de la Vigne [UMR EGFV]
dc.contributor.authorGIROLLET, Nabil
hal.structure.identifierLaboratoire des interactions plantes micro-organismes [LIPM]
dc.contributor.authorGOUZY, Jerome
hal.structure.identifierLaboratoire des interactions plantes micro-organismes [LIPM]
dc.contributor.authorSALLET, Erika
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorFOUCHE, Mathieu
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorQUERO-GARCIA, José
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorDIRLEWANGER, Elisabeth
dc.date.issued2019
dc.date.conference2019-01-12
dc.description.abstractEnSweet cherry (Prunus avium L.) is a diploid species with an estimated genome size of 338 MB (Arumuganathan et al. 1991) and an heterozygous genetic background.We have sequenced and assembled the genome of the ‘Regina’ sweet cherry variety, using FALCON UNZIP and optical mapping. Our de novo genome assembly resulted in a genome of 279 Mb (83 % of estimated genome size), 92 scaffolds and a largest scaffold of 16,3 Mb. The assembly has high contiguity (contig N50=1.23Mb, scaffold N50=5.96Mb) and good completeness with 95,9% BUSCO genes complete (scaffolds+ unscaffolded contigs + haplotigs).Here we present the construction of pseudomolecules using GBS markers, synteny between sweet cherry and peach genomes, and the preliminary results of structural annotation of the genome using a set of RNASeq assemblies of prunus avium.
dc.language.isoen
dc.subjectregina
dc.subjectprunus avium
dc.subjectgénome
dc.subjectarbre fruitier
dc.subjectfruit
dc.subjectcerisier doux
dc.title.enAn Improved Assembly of the Diploid ‘Regina’ Sweet Cherry Genome
dc.typeAutre communication scientifique (congrès sans actes - poster - séminaire...)
dc.subject.halSciences du Vivant [q-bio]
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale/Amélioration des plantes
bordeaux.pagePO1193
bordeaux.countryUS
bordeaux.conference.citySan Diego
bordeaux.peerReviewednon
hal.identifierhal-02570057
hal.version1
hal.invitednon
hal.proceedingsoui
hal.conference.end2019-01-16
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02570057v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.date=2019&rft.spage=PO1193&rft.epage=PO1193&rft.au=LE%20DANTEC,%20Lo%C3%AFck&GIROLLET,%20Nabil&GOUZY,%20Jerome&SALLET,%20Erika&FOUCHE,%20Mathieu&rft.genre=conference


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