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hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorSCUSSEL, Sarah
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorCANDRESSE, Thierry
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorMARAIS, Armelle
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorCLAVERIE, Sohini
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorHOAREAU, Murielle
hal.structure.identifierInstitut National de la Recherche pour l'Agriculture, la Pêche et l'Environnement [INRAPE]
dc.contributor.authorAZALI, Hamza A.
hal.structure.identifierUnité de Pathologie Végétale [PV]
dc.contributor.authorVERDIN, Eric
hal.structure.identifierInstitut Jean-Pierre Bourgin [IJPB]
hal.structure.identifierUnité de Pathologie Végétale [PV]
dc.contributor.authorTEPFER, Mark
hal.structure.identifierBiologie et Génétique des Interactions Plante-Parasite [UMR BGPI]
dc.contributor.authorFILLOUX, Denis
hal.structure.identifierBiologie et Génétique des Interactions Plante-Parasite [UMR BGPI]
dc.contributor.authorFERNANDEZ, Emmanuel
hal.structure.identifierBiologie et Génétique des Interactions Plante-Parasite [UMR BGPI]
dc.contributor.authorROUMAGNAC, Philippe
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorROBÈNE, Isabelle
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorLEFEUVRE, Pierre
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorJOURDA, Cyril
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorROUX-CUVELIER, Michel
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorLETT, Jean-Michel
dc.date.issued2019
dc.identifier.issn0304-8608
dc.description.abstractEnUsing high-throughput sequencing of small interfering RNAs (siRNAs), virion-associated nucleic acid (VANA), and double stranded RNAs (dsRNAs), we have determined the complete genome sequences of Comorian isolates of two ipomoviruses, cassava brown streak virus (CBSV) and a divergent isolate of Ugandan cassava brown streak virus (UCBSV-KM) representing a new strain of this virus. While the large ORF of CBSV shares the highest nucleotide sequence identity (95.9%) with a Tanzanian isolate of CBSV, the large UCBSV-KM ORF shares the highest nucleotide sequence identity (77.5%) with a Malawian isolate of UCBSV. This low value is near the species demarcation threshold for the family Potyviridae (<76%). Phylogenetic analysis confirms that UCBSV-KM represents a new lineage that is genetically distinct from the currently described UCBSV strains.
dc.language.isoen
dc.publisherSpringer Verlag
dc.title.enHigh-throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago
dc.typeArticle de revue
dc.identifier.doi10.1007/s00705-019-04228-7
dc.subject.halSciences du Vivant [q-bio]/Sciences agricoles
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie
dc.subject.halSciences du Vivant [q-bio]/Microbiologie et Parasitologie/Virologie
bordeaux.journalArchives of Virology
bordeaux.page2193–2196
bordeaux.volume164
bordeaux.issue8
bordeaux.peerReviewedoui
hal.identifierhal-02619935
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02619935v1
bordeaux.COinSctx_ver=Z39.88-2004&amp;rft_val_fmt=info:ofi/fmt:kev:mtx:journal&amp;rft.jtitle=Archives%20of%20Virology&amp;rft.date=2019&amp;rft.volume=164&amp;rft.issue=8&amp;rft.spage=2193%E2%80%932196&amp;rft.epage=2193%E2%80%932196&amp;rft.eissn=0304-8608&amp;rft.issn=0304-8608&amp;rft.au=SCUSSEL,%20Sarah&amp;CANDRESSE,%20Thierry&amp;MARAIS,%20Armelle&amp;CLAVERIE,%20Sohini&amp;HOAREAU,%20Murielle&amp;rft.genre=article


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