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High-throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago
hal.structure.identifier | Pôle de Protection des Plantes | |
dc.contributor.author | SCUSSEL, Sarah | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | CANDRESSE, Thierry | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | MARAIS, Armelle | |
hal.structure.identifier | Pôle de Protection des Plantes | |
dc.contributor.author | CLAVERIE, Sohini | |
hal.structure.identifier | Pôle de Protection des Plantes | |
dc.contributor.author | HOAREAU, Murielle | |
hal.structure.identifier | Institut National de la Recherche pour l'Agriculture, la Pêche et l'Environnement [INRAPE] | |
dc.contributor.author | AZALI, Hamza A. | |
hal.structure.identifier | Unité de Pathologie Végétale [PV] | |
dc.contributor.author | VERDIN, Eric | |
hal.structure.identifier | Institut Jean-Pierre Bourgin [IJPB] | |
hal.structure.identifier | Unité de Pathologie Végétale [PV] | |
dc.contributor.author | TEPFER, Mark | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
dc.contributor.author | FILLOUX, Denis | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
dc.contributor.author | FERNANDEZ, Emmanuel | |
hal.structure.identifier | Biologie et Génétique des Interactions Plante-Parasite [UMR BGPI] | |
dc.contributor.author | ROUMAGNAC, Philippe | |
hal.structure.identifier | Pôle de Protection des Plantes | |
dc.contributor.author | ROBÈNE, Isabelle | |
hal.structure.identifier | Pôle de Protection des Plantes | |
dc.contributor.author | LEFEUVRE, Pierre | |
hal.structure.identifier | Pôle de Protection des Plantes | |
dc.contributor.author | JOURDA, Cyril | |
hal.structure.identifier | Pôle de Protection des Plantes | |
dc.contributor.author | ROUX-CUVELIER, Michel | |
hal.structure.identifier | Pôle de Protection des Plantes | |
dc.contributor.author | LETT, Jean-Michel | |
dc.date.issued | 2019 | |
dc.identifier.issn | 0304-8608 | |
dc.description.abstractEn | Using high-throughput sequencing of small interfering RNAs (siRNAs), virion-associated nucleic acid (VANA), and double stranded RNAs (dsRNAs), we have determined the complete genome sequences of Comorian isolates of two ipomoviruses, cassava brown streak virus (CBSV) and a divergent isolate of Ugandan cassava brown streak virus (UCBSV-KM) representing a new strain of this virus. While the large ORF of CBSV shares the highest nucleotide sequence identity (95.9%) with a Tanzanian isolate of CBSV, the large UCBSV-KM ORF shares the highest nucleotide sequence identity (77.5%) with a Malawian isolate of UCBSV. This low value is near the species demarcation threshold for the family Potyviridae (<76%). Phylogenetic analysis confirms that UCBSV-KM represents a new lineage that is genetically distinct from the currently described UCBSV strains. | |
dc.language.iso | en | |
dc.publisher | Springer Verlag | |
dc.title.en | High-throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago | |
dc.type | Article de revue | |
dc.identifier.doi | 10.1007/s00705-019-04228-7 | |
dc.subject.hal | Sciences du Vivant [q-bio]/Sciences agricoles | |
dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie | |
dc.subject.hal | Sciences du Vivant [q-bio]/Microbiologie et Parasitologie/Virologie | |
bordeaux.journal | Archives of Virology | |
bordeaux.page | 2193–2196 | |
bordeaux.volume | 164 | |
bordeaux.issue | 8 | |
bordeaux.peerReviewed | oui | |
hal.identifier | hal-02619935 | |
hal.version | 1 | |
hal.popular | non | |
hal.audience | Internationale | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-02619935v1 | |
bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Archives%20of%20Virology&rft.date=2019&rft.volume=164&rft.issue=8&rft.spage=2193%E2%80%932196&rft.epage=2193%E2%80%932196&rft.eissn=0304-8608&rft.issn=0304-8608&rft.au=SCUSSEL,%20Sarah&CANDRESSE,%20Thierry&MARAIS,%20Armelle&CLAVERIE,%20Sohini&HOAREAU,%20Murielle&rft.genre=article |
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