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<em>Prunus</em> genetics and applications after de novo genome sequencing: achievements and prospects.

hal.structure.identifierCentre de Recerca en Agrigenòmica CSIC-IRTA-UAB-UB
dc.contributor.authorARANZANA, Maria Jose
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorDECROOCQ, Véronique
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorDIRLEWANGER, Elisabeth
hal.structure.identifierCentre de Recerca en Agrigenòmica CSIC-IRTA-UAB-UB
dc.contributor.authorEDUARDO, Iban
hal.structure.identifierZhejiang University
dc.contributor.authorGAO, Zhong Shan
hal.structure.identifierClemson University
dc.contributor.authorGASIC, Ksenija
hal.structure.identifierDepartment of Horticulture
dc.contributor.authorIEZZONI, Amy
hal.structure.identifierDepartment of Horticulture
dc.contributor.authorJUNG, Sook
hal.structure.identifierDepartment of Horticulture
dc.contributor.authorPEACE, Cameron
hal.structure.identifierInstituto de Investigaciones Agropecuarias
dc.contributor.authorPRIETO, Humberto
hal.structure.identifierKyoto University
dc.contributor.authorTAO, Ryutaro
hal.structure.identifierConsiglio per la Ricerca in Agricoltura e l’analisi dell’economia agraria = Council for Agricultural Research and Economics [CREA]
dc.contributor.authorVERDE, Ignazio
hal.structure.identifierUniversity of Kentucky [UK]
dc.contributor.authorABBOTT, Albert G
hal.structure.identifierCentre de Recerca en Agrigenòmica CSIC-IRTA-UAB-UB
dc.contributor.authorARUS, Pere
dc.date.issued2019
dc.identifier.issn2052-7276
dc.description.abstractEnPrior to the availability of whole-genome sequences, our understanding of the structural and functional aspects of Prunus tree genomes was limited mostly to molecular genetic mapping of important traits and development of EST resources. With public release of the peach genome and others that followed, significant advances in our knowledge of Prunus genomes and the genetic underpinnings of important traits ensued. In this review, we highlight key achievements in Prunus genetics and breeding driven by the availability of these whole-genome sequences. Within the structural and evolutionary contexts, we summarize: (1) the current status of Prunus whole-genome sequences; (2) preliminary and ongoing work on the sequence structure and diversity of the genomes; (3) the analyses of Prunus genome evolution driven by natural and man-made selection; and (4) provide insight into haploblocking genomes as a means to define genome-scale patterns of evolution that can be leveraged for trait selection in pedigree-based Prunus tree breeding programs worldwide. Functionally, we summarize recent and ongoing work that leverages whole-genome sequences to identify and characterize genes controlling 22 agronomically important Prunus traits. These include phenology, fruit quality, allergens, disease resistance, tree architecture, and self-incompatibility. Translationally, we explore the application of sequence-based marker-assisted breeding technologies and other sequence-guided biotechnological approaches for Prunus crop improvement. Finally, we present the current status of publically available Prunus genomics and genetics data housed mainly in the Genome Database for Rosaceae (GDR) and its updated functionalities for future bioinformatics-based Prunus genetics and genomics inquiry.
dc.language.isoen
dc.publisherNature Publishing Group
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.title.en<em>Prunus</em> genetics and applications after de novo genome sequencing: achievements and prospects.
dc.typeArticle de revue
dc.typeArticle de synthèse
dc.identifier.doi10.1038/s41438-019-0140-8
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale
bordeaux.journalHorticulture research
bordeaux.page58
bordeaux.volume6
bordeaux.peerReviewedoui
hal.identifierhal-02622092
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02622092v1
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