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Virion-associated nucleic acid-based metagenomics: a decade of advances in molecular characterization of plant viruses
hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
dc.contributor.author | MOUBSET, Oumaima | |
hal.structure.identifier | University of Oxford | |
dc.contributor.author | FRANÇOIS, Sarah | |
hal.structure.identifier | Gembloux Agro-Bio Tech [Gembloux] | |
dc.contributor.author | MACLOT, François | |
hal.structure.identifier | Institut Togolais de Recherche Agronomique [ITRA] | |
dc.contributor.author | PALANGA, Essowè | |
hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
dc.contributor.author | JULIAN, Charlotte | |
hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
dc.contributor.author | CLAUDE, Lisa | |
hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
dc.contributor.author | FERNANDEZ, Emmanuel | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
dc.contributor.author | ROTT, Philippe | |
hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
dc.contributor.author | DAUGROIS, Jean Heinrich | |
hal.structure.identifier | Diversité, Génomes & Interactions Microorganismes - Insectes [Montpellier] [DGIMI] | |
dc.contributor.author | ANTOINE-LORQUIN, Aymeric | |
hal.structure.identifier | Enza Zaden | |
dc.contributor.author | BERNARDO, Pauline | |
hal.structure.identifier | Gembloux Agro-Bio Tech [Gembloux] | |
hal.structure.identifier | Agroscope | |
dc.contributor.author | BLOUIN, Arnaud | |
hal.structure.identifier | Gembloux Agro-Bio Tech [Gembloux] | |
dc.contributor.author | TEMPLE, Coline | |
hal.structure.identifier | Arizona State University [Tempe] [ASU] | |
dc.contributor.author | KRABERGER, Simona | |
hal.structure.identifier | Arizona State University [Tempe] [ASU] | |
dc.contributor.author | FONTENELE, Rafaela | |
hal.structure.identifier | University of the Western Cape [UWC] | |
dc.contributor.author | HARKINS, Gordon | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | MA, Yuxin | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | MARAIS, Armelle | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | CANDRESSE, Thierry | |
hal.structure.identifier | Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
dc.contributor.author | BEN CHÉHIDA, Sélim | |
hal.structure.identifier | Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
dc.contributor.author | LEFEUVRE, Pierre | |
hal.structure.identifier | Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
dc.contributor.author | LETT, Jean-Michel | |
hal.structure.identifier | Arizona State University [Tempe] [ASU] | |
hal.structure.identifier | University of Cape Town | |
dc.contributor.author | VARSANI, Arvind | |
hal.structure.identifier | Gembloux Agro-Bio Tech [Gembloux] | |
dc.contributor.author | MASSART, Sébastien | |
hal.structure.identifier | Diversité, Génomes & Interactions Microorganismes - Insectes [Montpellier] [DGIMI] | |
dc.contributor.author | OGLIASTRO, Mylene | |
hal.structure.identifier | University of Cape Town | |
dc.contributor.author | MARTIN, Darren | |
hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
dc.contributor.author | FILLOUX, Denis | |
hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
dc.contributor.author | ROUMAGNAC, Philippe | |
dc.date.issued | 2022-12-28 | |
dc.identifier.issn | 0031-949X | |
dc.description.abstractEn | Over the last decade, viral metagenomic studies have resulted in the discovery of thousands of previously unknown viruses. These studies are likely to play a pivotal role in obtaining an accurate and robust understanding of how viruses affect the stability and productivity of ecosystems. Among the metagenomics-based approaches that have been developed since the beginning of the 21st century, shotgun metagenomics applied specifically to virion-associated nucleic acids (VANA) has been used to disentangle the diversity of the viral world. We summarize herein the results of 24 VANA-based studies, focusing on plant and insect samples conducted over the last decade (2010-2020). Collectively, viruses from 85 different families were reliably detected in these studies, including capsid-less RNA viruses that replicate in fungi, oomycetes and plants. Finally, strengths and weaknesses of the VANA approach are summarized and perspectives of applications in detection, epidemiological surveillance, environmental monitoring and ecology of plant viruses are provided. | |
dc.description.sponsorship | Mesure et cartographie de la richesse des virus des plante à l'échelle de l'écosytème | |
dc.language.iso | en | |
dc.publisher | American Phytopathological Society | |
dc.rights.uri | http://creativecommons.org/licenses/by-nc-nd/ | |
dc.subject.en | Ecology | |
dc.subject.en | Pathogen Detection | |
dc.subject.en | Virology | |
dc.title.en | Virion-associated nucleic acid-based metagenomics: a decade of advances in molecular characterization of plant viruses | |
dc.type | Article de revue | |
dc.identifier.doi | 10.1094/PHYTO-03-22-0096-RVW | |
dc.subject.hal | Sciences de l'environnement/Biodiversité et Ecologie | |
dc.subject.hal | Sciences du Vivant [q-bio] | |
dc.subject.hal | Sciences du Vivant [q-bio]/Biologie animale/Zoologie des invertébrés | |
dc.subject.hal | Sciences du Vivant [q-bio]/Biologie cellulaire/Organisation et fonctions cellulaires [q-bio.SC] | |
dc.subject.hal | Sciences du Vivant [q-bio]/Microbiologie et Parasitologie/Virologie | |
dc.description.sponsorshipEurope | Innovative Network for Next Generation Training and Sequencing of Virome | |
bordeaux.journal | Phytopathology | |
bordeaux.page | 2253-2272 | |
bordeaux.volume | 112 | |
bordeaux.issue | 11 | |
bordeaux.peerReviewed | oui | |
hal.identifier | hal-03705057 | |
hal.version | 1 | |
hal.popular | non | |
hal.audience | Internationale | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-03705057v1 | |
bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Phytopathology&rft.date=2022-12-28&rft.volume=112&rft.issue=11&rft.spage=2253-2272&rft.epage=2253-2272&rft.eissn=0031-949X&rft.issn=0031-949X&rft.au=MOUBSET,%20Oumaima&FRAN%C3%87OIS,%20Sarah&MACLOT,%20Fran%C3%A7ois&PALANGA,%20Essow%C3%A8&JULIAN,%20Charlotte&rft.genre=article |
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