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Hardwood tree genomics: unlocking woody plant biology

hal.structure.identifierOak Ridge National Laboratory
dc.contributor.authorTUSKAN, Gerald A.
hal.structure.identifierUnited States Department of Agriculture [USDA]
dc.contributor.authorGROOVER, Andrew T.
hal.structure.identifierHudsonAlpha Institute for Biotechnology [Huntsville, AL]
hal.structure.identifierJoint Genome Institute [JGI]
dc.contributor.authorSCHMUTZ, Jeremy
hal.structure.identifierDepartment of Biology
dc.contributor.authorDIFAZIO, Stephen Paul
hal.structure.identifierUniversity of Pretoria [South Africa]
dc.contributor.authorMYBURG, Alexander
hal.structure.identifierEmpresa Brasileira de Pesquisa Agropecuária [Embrapa]
hal.structure.identifierUniversidade Católica de Brasília=Catholic University of Brasília [UCB]
dc.contributor.authorGRATTAPAGLIA, Dario
hal.structure.identifierCornell University [New York]
dc.contributor.authorSMART, Lawrence B
hal.structure.identifierNanjing Forestry University [NFU]
dc.contributor.authorYIN, Tongming
hal.structure.identifierLaboratoire de Bioinformatique pour la Génomique et la Biodiversité [LBGB]
dc.contributor.authorAURY, Jean-Marc
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorKREMER, Antoine
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
hal.structure.identifierInstitut des Sciences de l'Evolution de Montpellier [UMR ISEM]
dc.contributor.authorLEROY, Thibault
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorLE PROVOST, Grégoire
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorPLOMION, Christophe
hal.structure.identifierPennsylvania State University [Penn State]
dc.contributor.authorCARLSON, John E.
hal.structure.identifierNew Mexico State University
dc.contributor.authorRANDALL, Jennifer
hal.structure.identifierThe American Chestnut Foundation
dc.contributor.authorWESTBROOK, Jared
hal.structure.identifierHudsonAlpha Institute for Biotechnology [Huntsville, AL]
dc.contributor.authorGRIMWOOD, Jane
hal.structure.identifierOak Ridge National Laboratory
dc.contributor.authorMUCHERO, Wellington
hal.structure.identifierOak Ridge National Laboratory
dc.contributor.authorJACOBSON, Daniel
hal.structure.identifierOak Ridge National Laboratory
dc.contributor.authorMICHENER, Joshua K.
dc.date.issued2018
dc.identifier.issn1664-462X
dc.description.abstractEnWoody perennial angiosperms (i.e., hardwood trees) are polyphyletic in origin and occur in most angiosperm orders. Despite their independent origins, hardwoods have shared physiological, anatomical, and life history traits distinct from their herbaceous relatives. New high-throughput DNA sequencing platforms have provided access to numerous woody plant genomes beyond the early reference genomes of Populus and Eucalyptus, references that now include willow and oak, with pecan and chestnut soon to follow. Genomic studies within these diverse and undomesticated species have successfully linked genes to ecological, physiological, and developmental traits directly. Moreover, comparative genomic approaches are providing insights into speciation events while large-scale DNA resequencing of native collections is identifying population-level genetic diversity responsible for variation in key woody plant biology across and within species. Current research is focused on developing genomic prediction models for breeding, defining speciation and local adaptation, detecting and characterizing somatic mutations, revealing the mechanisms of gender determination and flowering, and application of systems biology approaches to model complex regulatory networks underlying quantitative traits. Emerging technologies such as single-molecule, long-read sequencing is being employed as additional woody plant species, and genotypes within species, are sequenced, thus enabling a comparative ("evo-devo") approach to understanding the unique biology of large woody plants. Resource availability, current genomic and genetic applications, new discoveries and predicted future developments are illustrated and discussed for poplar, eucalyptus, willow, oak, chestnut, and pecan.
dc.language.isoen
dc.publisherFrontiers
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.subjectadaptive traits
dc.subjectcomparative genomics
dc.subjectquantitative genetics
dc.subjectsomatic mutations
dc.subject.enevolutionary ecology
dc.subject.entree habit
dc.title.enHardwood tree genomics: unlocking woody plant biology
dc.typeArticle de revue
dc.identifier.doi10.3389/fpls.2018.01799
dc.subject.halSciences du Vivant [q-bio]
bordeaux.journalFrontiers in Plant Science
bordeaux.page1-9
bordeaux.volume9
bordeaux.peerReviewedoui
hal.identifierhal-02622509
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02622509v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Frontiers%20in%20Plant%20Science&rft.date=2018&rft.volume=9&rft.spage=1-9&rft.epage=1-9&rft.eissn=1664-462X&rft.issn=1664-462X&rft.au=TUSKAN,%20Gerald%20A.&GROOVER,%20Andrew%20T.&SCHMUTZ,%20Jeremy&DIFAZIO,%20Stephen%20Paul&MYBURG,%20Alexander&rft.genre=article


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