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De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology

hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorCANALES, Javier
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorBAUTISTA, Rocío
hal.structure.identifierLaboratoire de Physique et Physiologie Intégratives de l'Arbre Fruitier et Forestier [PIAF]
dc.contributor.authorLABEL, Philippe
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorGÓMEZ-MALDONADO, Josefa
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
hal.structure.identifierHelixVenture
dc.contributor.authorLESUR, Isabelle
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorFERNANDEZ-POZO, Noe
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorRUEDA-LÓPEZ, Marina
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorGUERRERO-FERNÁNDEZ, Darío
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorCASTRO-RODRÍGUEZ, Vanessa
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorBENZEKRI, Hicham
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorCAÑAS, Rafael A
hal.structure.identifierInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria = National Institute for Agricultural and Food Research and Technology [INIA]
dc.contributor.authorGUEVARA, María-Angeles
hal.structure.identifierInstituto de Biologia Experimental e Tecnológica [IBET]
hal.structure.identifierInstituto de Technologia Quimica e Biologica
dc.contributor.authorRODRIGUES, Andreia
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorSEOANE, Pedro
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorTEYSSIER, Caroline
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorMOREL, Alexandre
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorEHRENMANN, François
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorLE PROVOST, Grégoire
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorLALANNE, Céline
hal.structure.identifierUnité de Mathématiques et Informatique Appliquées de Toulouse [MIAT INRA]
dc.contributor.authorNOIROT, Céline
hal.structure.identifierUnité de Mathématiques et Informatique Appliquées de Toulouse [MIAT INRA]
dc.contributor.authorKLOPP, Christophe
hal.structure.identifierInstitut Technologique Forêt Cellulose Bois-construction Ameublement [FCBA]
dc.contributor.authorREYMOND, Isabelle
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorGARCÍA-GUTIÉRREZ, Angel
hal.structure.identifierInstitut Technologique Forêt Cellulose Bois-construction Ameublement [FCBA]
dc.contributor.authorTRONTIN, Jean-François
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorLELU-WALTER, Marie-Anne
hal.structure.identifierInstituto de Biologia Experimental e Tecnológica [IBET]
hal.structure.identifierInstituto de Technologia Quimica e Biologica
dc.contributor.authorMIGUEL, Célia
hal.structure.identifierInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria = National Institute for Agricultural and Food Research and Technology [INIA]
dc.contributor.authorCERVERA, María Teresa
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorCANTÓN, Francisco R
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorPLOMION, Christophe
hal.structure.identifierInstitut Technologique Forêt Cellulose Bois-construction Ameublement [FCBA]
dc.contributor.authorHARVENGT, Luc
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorAVILA, Concepción
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorGONZALO CLAROS, M
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorCÁNOVAS, Francisco M
dc.date.issued2014
dc.identifier.issn1467-7644
dc.description.abstractEnMaritime pine (Pinus pinasterAit.) is a widely distributed conifer species in Southwestern Europe and one of the most advanced models for conifer research. In the current work, comprehensive characterization of the maritime pine transcriptome was performed using a combination of two different next-generation sequencing platforms, 454 and Illumina. De novo assembly of the transcriptome provided a catalogue of 26 020 unique transcripts in maritime pine trees and a collection of 9641 full-length cDNAs. Quality of the transcriptome assembly was validated by RT-PCR amplification of selected transcripts for structural and regulatory genes. Transcription factors and enzyme-encoding transcripts were annotated. Furthermore, the available sequencing data permitted the identification of polymorphisms and the establishment of robust single nucleotide polymorphism (SNP) and simple-sequence repeat (SSR) databases for genotyping applications and integration of translational genomics in maritime pine breeding programmes. All our data are freely available at SustainpineDB, the P. pinaster expressional database. Results reported here on the maritime pine transcriptome represent a valuable resource for future basic and applied studies on this ecological and economically important pine species.
dc.language.isoen
dc.publisherWiley
dc.subjecttranscription factors
dc.subjectassemblage du transcriptome
dc.subject.enconifers
dc.subject.enfull-length cDNA
dc.subject.ennext-generation sequencing
dc.subject.ensingle nucleotide polymorphism
dc.subject.entranscriptome sequencing
dc.title.enDe novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology
dc.typeArticle de revue
dc.identifier.doi10.1111/pbi.12136
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale
dc.subject.halSciences du Vivant [q-bio]/Biotechnologies
bordeaux.journalPlant Biotechnology Journal
bordeaux.page286-299
bordeaux.volume12
bordeaux.issue3
bordeaux.peerReviewedoui
hal.identifierhal-02640932
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02640932v1
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