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Fruit fly phylogeny imprints bacterial gut microbiota

hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorRAVIGNÉ, Virginie
hal.structure.identifierInstitut de Systématique, Evolution, Biodiversité [ISYEB]
dc.contributor.authorBECKER, Nathalie
hal.structure.identifierCentre d’Infection et d’Immunité de Lille - INSERM U 1019 - UMR 9017 - UMR 8204 [CIIL]
dc.contributor.authorMASSOL, François
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGUICHOUX, Erwan
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorBOURY, Christophe
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorMAHÉ, Frédéric
hal.structure.identifierCentre de Biologie pour la Gestion des Populations [UMR CBGP]
dc.contributor.authorFACON, Benoit
dc.date.issued2022-10
dc.identifier.issn1752-4563
dc.description.abstractEnOne promising avenue for reconciling the goals of crop production and ecosystem preservation consists in the manipulation of beneficial biotic interactions, such as between insects and microbes. Insect gut microbiota can affect host fitness by contributing to development, host immunity, nutrition or behavior. However, the determinants of gut microbiota composition and structure, including host phylogeny and host ecology, remain poorly known. Here we used a well-studied community of eight sympatric fruit fly species to test the contributions of fly phylogeny, fly specialization, and fly sampling environment on the composition and structure of bacterial gut microbiota. Comprising both specialists and generalists, these species belong to five genera belonging to two tribes of the Tephritidae family. For each fly species, one field and one laboratory samples were studied. Bacterial inventories to the genus level were produced using 16S metabarcoding with the Oxford Nanopore technology. Sample bacterial compositions were analyzed with recent network-based clustering techniques. Whereas gut microbiota were dominated by the Enterobacteriacaeae family in all samples, microbial profiles varied across samples, mainly in relation with fly identity and sampling environment. Alpha diversity varied across samples and was higher in the Dacinae tribe than in the Ceratitinae tribe. Network analyses allowed grouping samples according to their microbial profiles. The resulting groups were very congruent with fly phylogeny, with a significant modulation of sampling environment, and a very low impact of fly specialization. Such a strong imprint of host phylogeny in sympatric fly species, some of which share much of their host plants, suggests important control of fruit flies on their gut microbiota through vertical transmission and/or intense filtering of environmental bacteria.
dc.description.sponsorshipBiosurveillance Next-Gen des changements dans la structure et le fonctionnement des écosystèmes - ANR-17-CE32-0011
dc.description.sponsorshipPlateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur " - ANR-10-EQPX-0016
dc.language.isoen
dc.publisherBlackwell
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.subject.enlong-read sequencing
dc.subject.enmetabarcoding
dc.subject.encommunity ecology
dc.title.enFruit fly phylogeny imprints bacterial gut microbiota
dc.typeArticle de revue
dc.identifier.doi10.1111/eva.13352
dc.subject.halSciences du Vivant [q-bio]/Ecologie, Environnement/Interactions entre organismes
dc.subject.halSciences du Vivant [q-bio]/Biodiversité/Evolution [q-bio.PE]
dc.subject.halSciences du Vivant [q-bio]/Biodiversité/Systématique, phylogénie et taxonomie
dc.subject.halSciences du Vivant [q-bio]/Ecologie, Environnement
dc.subject.halSciences du Vivant [q-bio]/Microbiologie et Parasitologie
dc.subject.halSciences du Vivant [q-bio]/Microbiologie et Parasitologie/Bactériologie
dc.subject.halSciences du Vivant [q-bio]/Sciences agricoles/Sciences et techniques de l'agriculture
bordeaux.journalEvolutionary Applications
bordeaux.page1621-1638
bordeaux.volume15
bordeaux.issue10
bordeaux.peerReviewedoui
hal.identifierhal-03640460
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-03640460v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Evolutionary%20Applications&rft.date=2022-10&rft.volume=15&rft.issue=10&rft.spage=1621-1638&rft.epage=1621-1638&rft.eissn=1752-4563&rft.issn=1752-4563&rft.au=RAVIGN%C3%89,%20Virginie&BECKER,%20Nathalie&MASSOL,%20Fran%C3%A7ois&GUICHOUX,%20Erwan&BOURY,%20Christophe&rft.genre=article


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