hal.structure.identifier | Évolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 [Evo-Eco-Paléo (EEP)] | |
dc.contributor.author | DUBART, Maxime | |
hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
dc.contributor.author | ALONSO, Pascal | |
hal.structure.identifier | Agroécologie [Dijon] | |
dc.contributor.author | BARROSO-BERGADA, Didac | |
hal.structure.identifier | Institut de Systématique, Evolution, Biodiversité [ISYEB ] | |
dc.contributor.author | BECKER, Nathalie | |
hal.structure.identifier | Centre d’Ecologie Fonctionnelle et Evolutive [CEFE] | |
dc.contributor.author | BETHUNE, Kevin | |
hal.structure.identifier | Agroécologie [Dijon] | |
dc.contributor.author | BOHAN, David | |
hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
dc.contributor.author | BOURY, Christophe | |
hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
dc.contributor.author | CAMBON, Marine | |
hal.structure.identifier | Institut de Génétique, Environnement et Protection des Plantes [IGEPP] | |
dc.contributor.author | CANARD, Elsa | |
hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
dc.contributor.author | CHANCEREL, Emilie | |
hal.structure.identifier | Mathématiques et Informatique Appliquées [MIA Paris-Saclay] | |
dc.contributor.author | CHIQUET, Julien | |
hal.structure.identifier | Centre d’Ecologie Fonctionnelle et Evolutive [CEFE] | |
dc.contributor.author | DAVID, Patrice | |
hal.structure.identifier | Évolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 [Evo-Eco-Paléo (EEP)] | |
hal.structure.identifier | University of California [Riverside] [UC Riverside] | |
dc.contributor.author | DE MANINCOR, Natasha | |
hal.structure.identifier | Mathématiques et Informatique Appliquées [MIA Paris-Saclay] | |
dc.contributor.author | DONNET, Sophie | |
hal.structure.identifier | Évolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 [Evo-Eco-Paléo (EEP)] | |
dc.contributor.author | DUPUTIÉ, Anne | |
hal.structure.identifier | Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT] | |
hal.structure.identifier | Centre de Biologie pour la Gestion des Populations [UMR CBGP] | |
dc.contributor.author | FACON, Benoît | |
hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
dc.contributor.author | GUICHOUX, Erwan | |
hal.structure.identifier | Mathématiques et Informatique Appliquées [MIA Paris-Saclay] | |
dc.contributor.author | LE MINH, Tâm | |
hal.structure.identifier | Institut de Génétique, Environnement et Protection des Plantes [IGEPP] | |
dc.contributor.author | ORTIZ-MARTÍNEZ, Sebastián | |
hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
dc.contributor.author | PIOUCEAU, Lucie | |
hal.structure.identifier | Institut de Génétique, Environnement et Protection des Plantes [IGEPP] | |
dc.contributor.author | SACCO-MARTRET DE PRÉVILLE, Ambre | |
hal.structure.identifier | Institut de Génétique, Environnement et Protection des Plantes [IGEPP] | |
dc.contributor.author | PLANTEGENEST, Manuel | |
hal.structure.identifier | Évolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 [Evo-Eco-Paléo (EEP)] | |
dc.contributor.author | POUX, Céline | |
hal.structure.identifier | Peuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
hal.structure.identifier | Institut de Systématique, Evolution, Biodiversité [ISYEB ] | |
dc.contributor.author | RAVIGNÉ, Virginie | |
hal.structure.identifier | Mathématiques et Informatique Appliquées [MIA Paris-Saclay] | |
hal.structure.identifier | Laboratoire de Probabilités, Statistique et Modélisation [LPSM (UMR_8001)] | |
dc.contributor.author | ROBIN, Stéphane | |
hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
dc.contributor.author | TRILLAT, Marine | |
hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
dc.contributor.author | VACHER, Corinne | |
hal.structure.identifier | Plant Health Institute of Montpellier [UMR PHIM] | |
hal.structure.identifier | Département Systèmes Biologiques [Cirad-BIOS] | |
dc.contributor.author | VERNIÈRE, Christian | |
hal.structure.identifier | Centre d’Infection et d’Immunité de Lille - INSERM U 1019 - UMR 9017 - UMR 8204 [CIIL] | |
dc.contributor.author | MASSOL, François | |
dc.date.accessioned | 2022-10-12T12:02:13Z | |
dc.date.available | 2022-10-12T12:02:13Z | |
dc.date.issued | 2021 | |
dc.identifier.isbn | 978-0-323-91503-8 | |
dc.identifier.uri | https://oskar-bordeaux.fr/handle/20.500.12278/155664 | |
dc.description.abstractEn | Biomonitoring ecosystems is necessary in order to evaluate risks and to efficiently manage ecosystems and their associated services. Agrosystems are the target of multiple stressors that can affect many species through effects cascading along food webs. However, classic biomonitoring, focused on species diversity or indicator species, might be a poor predictor of the risk of such whole-ecosystem perturbations. Thanks to high-throughput sequencing methods, however, it might be possible to obtain sufficient information about entire ecological communities to infer the functioning of their associated interaction networks, and thus monitor more closely the risk of the collapse of entire food webs due to external stressors.In the course of the ‘next-generation biomonitoring’ project, we collectively sought to experiment with this idea of inferring ecological networks on the basis of metabarcoding information gathered on different systems. We here give an overview of issues and preliminary results associated with this endeavour and highlight the main difficulties that such next-generation biomonitoring is still facing. Going from sampling protocols up to methods for comparing inferred networks, through biomolecular, bioinformatic, and network inference, we review all steps of the process, with a view towards generality and transferability towards other systems. | |
dc.description.sponsorship | Biosurveillance Next-Gen des changements dans la structure et le fonctionnement des écosystèmes - ANR-17-CE32-0011 | |
dc.description.sponsorship | Adaptation et résilience des réseaux écologiques spatialisés face aux changements d'origine humaine | |
dc.language.iso | en | |
dc.publisher | Elsevier | |
dc.source.title | The Future of Agricultural Landscapes, Part III | |
dc.subject.en | Ecological networks | |
dc.subject.en | Network inference | |
dc.subject.en | Next-generation biomonitoring | |
dc.subject.en | High throughput sequencing | |
dc.subject.en | Logic-based machine learning | |
dc.subject.en | Next-generation sequencing | |
dc.subject.en | Microbiomese | |
dc.subject.en | DNA | |
dc.title.en | Coupling ecological network analysis with high-throughput sequencing-based surveys: Lessons from the next-generation biomonitoring project | |
dc.type | Chapitre d'ouvrage | |
dc.identifier.doi | 10.1016/bs.aecr.2021.10.007 | |
dc.subject.hal | Sciences de l'environnement/Biodiversité et Ecologie | |
bordeaux.page | 367-430 | |
bordeaux.volume | 65 | |
bordeaux.hal.laboratories | BioGeCo (Biodiversité Gènes & Communautés) - UMR 1202 | * |
bordeaux.institution | Université de Bordeaux | |
bordeaux.institution | INRAE | |
hal.identifier | hal-03689869 | |
hal.version | 1 | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-03689869v1 | |
bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.btitle=The%20Future%20of%20Agricultural%20Landscapes,%20Part%20III&rft.date=2021&rft.volume=65&rft.spage=367-430&rft.epage=367-430&rft.au=DUBART,%20Maxime&ALONSO,%20Pascal&BARROSO-BERGADA,%20Didac&BECKER,%20Nathalie&BETHUNE,%20Kevin&rft.isbn=978-0-323-91503-8&rft.genre=unknown | |