Afficher la notice abrégée

The genome of Theobroma cacao.

dc.contributor.authorARGOUT, Xavier
hal.structure.identifierGénétique Diversité et Ecophysiologie des Céréales [GDEC]
dc.contributor.authorSALSE, Jerome
hal.structure.identifierGénomique métabolique [UMR 8030]
dc.contributor.authorAURY, Jean-Marc
dc.contributor.authorGUILTINAN, Mark J
hal.structure.identifierDéveloppement et amélioration des plantes [UMR DAP]
dc.contributor.authorDROC, Gaetan
hal.structure.identifierLaboratoire des interactions plantes micro-organismes [LIPM]
dc.contributor.authorGOUZY, Jerome
dc.contributor.authorALLEGRE, Mathilde
hal.structure.identifierLaboratoire Génome et développement des plantes [LGDP]
dc.contributor.authorCHAPARRO, Cristian
dc.contributor.authorLEGAVRE, Thierry
dc.contributor.authorMAXIMOVA, Siela N
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorABROUK, Michael
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorMURAT, Florent
dc.contributor.authorFOUET, Olivier
hal.structure.identifierGénomique métabolique [UMR 8030]
hal.structure.identifierGenoscope - Centre national de séquençage [Evry] [GENOSCOPE]
dc.contributor.authorPOULAIN, Julie
dc.contributor.authorROGUET, Yolande
dc.contributor.authorRODIER-GOUD, Maguy
dc.contributor.authorBARBOSA-NETO, Jose Fernandes
hal.structure.identifierLaboratoire Génome et développement des plantes [LGDP]
dc.contributor.authorSABOT, Francois
hal.structure.identifierEcology and Evolutionary Biology [Tucson] [EEB]
dc.contributor.authorKUDRNA, Dave
dc.contributor.authorAMMIRAJU, Jetty Siva S
dc.contributor.authorSCHUSTER, Stephan C
dc.contributor.authorCARLSON, John E
dc.contributor.authorSALLET, Erika
hal.structure.identifierInstitut National de la Recherche Agronomique [INRA]
dc.contributor.authorSCHIEX, Thomas
hal.structure.identifierAmélioration génétique et adaptation des plantes méditerranéennes et tropicales [UMR AGAP]
dc.contributor.authorDIEVART, Anne
hal.structure.identifierCold Spring Harbor Laboratory [CSHL]
dc.contributor.authorKRAMER, Melissa
dc.contributor.authorGELLEY, Laura
dc.contributor.authorSHI, Zi
hal.structure.identifierInstitut Jean-Pierre Bourgin [IJPB]
dc.contributor.authorBÉRARD, Aurélie
dc.contributor.authorVIOT, Christopher
dc.contributor.authorBOCCARA, Michel
hal.structure.identifierPolymorphismes d'intérêt agronomique [UMR PIA]
dc.contributor.authorRISTERUCCI, Ange Marie
hal.structure.identifierCentre de Coopération Internationale en Recherche Agronomique pour le Développement [Cirad]
dc.contributor.authorGUIGNON, Valentin
dc.contributor.authorSABAU, Xavier
dc.contributor.authorAXTELL, Michael J
dc.contributor.authorMA, Zhaorong
dc.contributor.authorZHANG, Yufan
hal.structure.identifierInstitut des sciences du végétal [ISV]
dc.contributor.authorBROWN, Spencer
hal.structure.identifierInstitut des sciences du végétal [ISV]
dc.contributor.authorBOURGE, Mickael
hal.structure.identifierEcology and Evolutionary Biology [Tucson] [EEB]
dc.contributor.authorGOLSER, Wolfgang
dc.contributor.authorSONG, Xiang
dc.contributor.authorCLEMENT, Didier
hal.structure.identifierAmélioration génétique et adaptation des plantes méditerranéennes et tropicales [UMR AGAP]
dc.contributor.authorRIVALLAN, Ronan
dc.contributor.authorTAHI, Mathias
dc.contributor.authorAKAZA, Joseph Moroh
dc.contributor.authorPITOLLAT, Bertrand
dc.contributor.authorGRAMACHO, Karina
hal.structure.identifierAmélioration génétique et adaptation des plantes méditerranéennes et tropicales [UMR AGAP]
dc.contributor.authorD'HONT, Angélique
hal.structure.identifierEtude du Polymorphisme des Génomes Végétaux [EPGV]
dc.contributor.authorBRUNEL, Dominique
dc.contributor.authorINFANTE, Diogenes
dc.contributor.authorKEBE, Ismael
hal.structure.identifierAnimalerie spécialisée
dc.contributor.authorCOSTET, Pierre
dc.contributor.authorWING, Rod
hal.structure.identifierCold Spring Harbor Laboratory [CSHL]
dc.contributor.authorMCCOMBIE, W Richard
hal.structure.identifierDéveloppement et amélioration des plantes [UMR DAP]
dc.contributor.authorGUIDERDONI, Emmanuel
hal.structure.identifierGénomique métabolique [UMR 8030]
dc.contributor.authorQUETIER, Francis
hal.structure.identifierLaboratoire Génome et développement des plantes [LGDP]
dc.contributor.authorPANAUD, Olivier
hal.structure.identifierGenoscope - Centre national de séquençage [Evry] [GENOSCOPE]
dc.contributor.authorWINCKER, Patrick
hal.structure.identifierGénomique métabolique [UMR 8030]
dc.contributor.authorBOCS, Stephanie
dc.contributor.authorLANAUD, Claire
dc.date.issued2011-02
dc.identifier.issn1061-4036
dc.description.abstractEnWe sequenced and assembled the draft genome of Theobroma cacao, an economically important tropical-fruit tree crop that is the source of chocolate. This assembly corresponds to 76% of the estimated genome size and contains almost all previously described genes, with 82% of these genes anchored on the 10 T. cacao chromosomes. Analysis of this sequence information highlighted specific expansion of some gene families during evolution, for example, flavonoid-related genes. It also provides a major source of candidate genes for T. cacao improvement. Based on the inferred paleohistory of the T. cacao genome, we propose an evolutionary scenario whereby the ten T. cacao chromosomes were shaped from an ancestor through eleven chromosome fusions.
dc.language.isoen
dc.publisherNature Publishing Group
dc.subjectcocoa statistics
dc.subjectcacaoyer
dc.subject.encacao genome
dc.subject.meshCacao
dc.subject.meshCell Nucleus
dc.subject.meshGenome, Plant
dc.subject.meshGenotype
dc.subject.meshHomozygote
dc.subject.meshIn Situ Hybridization
dc.subject.meshModels, Genetic
dc.subject.meshQuantitative Trait Loci
dc.subject.meshDNA
dc.subject.meshDNA Transposable Elements
dc.subject.meshEvolution, Molecular
dc.subject.meshGene Expression Regulation, Plant
dc.subject.meshGenes, Plant
dc.title.enThe genome of Theobroma cacao.
dc.typeArticle de revue
dc.identifier.doi10.1038/ng.736
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale
bordeaux.journalNature Genetics
bordeaux.page101-8
bordeaux.volume43
bordeaux.issue2
bordeaux.peerReviewedoui
hal.identifierhal-00855922
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-00855922v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Nature%20Genetics&rft.date=2011-02&rft.volume=43&rft.issue=2&rft.spage=101-8&rft.epage=101-8&rft.eissn=1061-4036&rft.issn=1061-4036&rft.au=ARGOUT,%20Xavier&SALSE,%20Jerome&AURY,%20Jean-Marc&GUILTINAN,%20Mark%20J&DROC,%20Gaetan&rft.genre=article


Fichier(s) constituant ce document

FichiersTailleFormatVue

Il n'y a pas de fichiers associés à ce document.

Ce document figure dans la(les) collection(s) suivante(s)

Afficher la notice abrégée