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A Virome Scanning of Saffron (Crocus sativus L.) at the National Scale in Iran Using High-Throughput Sequencing Technologies

hal.structure.identifierUniversity of Tehran
dc.contributor.authorVALOUZI, Hajar
hal.structure.identifierUniversity of Tehran
dc.contributor.authorDIZADJI, Akbar
hal.structure.identifierUniversity of Tehran
dc.contributor.authorGOLNARAGHI, Alireza
hal.structure.identifierUniversity of Tehran
dc.contributor.authorSALAMI, Seyed Alireza
hal.structure.identifierUniversité de Liège = University of Liège = Universiteit van Luik = Universität Lüttich [ULiège]
dc.contributor.authorFONTDEVILA PARETA, Nuria
hal.structure.identifierUniversité de Liège = University of Liège = Universiteit van Luik = Universität Lüttich [ULiège]
dc.contributor.authorÖNDER, Serkan
hal.structure.identifierUniversité de Liège = University of Liège = Universiteit van Luik = Universität Lüttich [ULiège]
dc.contributor.authorSELMI, Ilhem
hal.structure.identifierUniversité de Liège = University of Liège = Universiteit van Luik = Universität Lüttich [ULiège]
dc.contributor.authorROLLIN, Johan
hal.structure.identifierUniversité de Liège = University of Liège = Universiteit van Luik = Universität Lüttich [ULiège]
dc.contributor.authorBERHAL, Chadi
hal.structure.identifierGénétique et Amélioration des Fruits et Légumes [GAFL]
dc.contributor.authorTAMISIER, Lucie
hal.structure.identifierBiologie du fruit et pathologie [BFP]
hal.structure.identifierUnité de recherche TERRA [Gembloux]
dc.contributor.authorMACLOT, François
hal.structure.identifierhenzhen University, S
dc.contributor.authorWANG, Long
hal.structure.identifierhenzhen University, S
dc.contributor.authorZHANG, Rui
hal.structure.identifierbamyan University,
dc.contributor.authorBAHLOLZADA, Habibullah
hal.structure.identifierPeuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
dc.contributor.authorLEFEUVRE, Pierre
hal.structure.identifierUniversité de Liège = University of Liège = Universiteit van Luik = Universität Lüttich [ULiège]
dc.contributor.authorMASSART, Sébastien
dc.date.accessioned2025-08-07T02:03:20Z
dc.date.available2025-08-07T02:03:20Z
dc.date.issued2025-08-04
dc.identifier.issn1999-4915
dc.identifier.urihttps://oskar-bordeaux.fr/handle/20.500.12278/207408
dc.description.abstractEnSaffron (Crocus sativus L.) is a vegetatively propagated crop of high economic and cultural value, potentially affected by viral infections that may impact its productivity. Despite Iran's dominance in global saffron production, knowledge of its virome remains limited. In this study, we conducted the first nationwide virome survey of saffron in Iran employing a high-throughput sequencing (HTS) approach on pooled samples obtained from eleven provinces in Iran and one location in Afghanistan. Members of three virus families were detected-Potyviridae (Potyvirus), Solemoviridae (Polerovirus), and Geminiviridae (Mastrevirus)-as well as one satellite from the family Alphasatellitidae (Clecrusatellite). A novel Potyvirus, tentatively named saffron Iran virus (SaIRV) and detected in three provinces, shares less than 68% nucleotide identity with known Potyvirus species, thus meeting the ICTV criteria for designation as a new species. Genetic diversity analyses revealed substantial intrapopulation SNP variation but no clear geographical clustering. Among the two wild Crocus species sampled, only Crocus speciosus harbored turnip mosaic virus. Virome network and phylogenetic analyses confirmed widespread viral circulation likely driven by corm-mediated propagation. Our findings highlight the need for targeted certification programs and biological characterization of key viruses to mitigate potential impacts on saffron yield and quality
dc.language.isoen
dc.publisherMDPI
dc.subject.enCrocus sativus
dc.subject.ensaffron
dc.subject.envirome
dc.subject.enhigh-throughput sequencing
dc.subject.enVANA
dc.subject.envirus diversity
dc.subject.encertification
dc.subject.envirus surveillance
dc.title.enA Virome Scanning of Saffron (Crocus sativus L.) at the National Scale in Iran Using High-Throughput Sequencing Technologies
dc.typeArticle de revue
dc.identifier.doi10.3390/v17081079
dc.subject.halSciences de l'environnement
bordeaux.journalViruses
bordeaux.page1079
bordeaux.volume17
bordeaux.hal.laboratoriesBiologie du Fruit & Pathologie (BFP) - UMR 1332*
bordeaux.issue8
bordeaux.institutionUniversité de Bordeaux
bordeaux.institutionINRAE
bordeaux.peerReviewedoui
hal.identifierhal-05201842
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-05201842v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Viruses&rft.date=2025-08-04&rft.volume=17&rft.issue=8&rft.spage=1079&rft.epage=1079&rft.eissn=1999-4915&rft.issn=1999-4915&rft.au=VALOUZI,%20Hajar&DIZADJI,%20Akbar&GOLNARAGHI,%20Alireza&SALAMI,%20Seyed%20Alireza&FONTDEVILA%20PARETA,%20Nuria&rft.genre=article


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