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The genetic architecture of repeated local adaptation to climate in distantly related plants

dc.contributor.authorWHITING, James
dc.contributor.authorBOOKER, Tom
dc.contributor.authorROUGEUX, Clément
dc.contributor.authorLIND, Brandon
dc.contributor.authorSINGH, Pooja
dc.contributor.authorLU, Mengmeng
dc.contributor.authorHUANG, Kaichi
dc.contributor.authorWHITLOCK, Michael
dc.contributor.authorAITKEN, Sally
dc.contributor.authorANDREW, Rose
dc.contributor.authorBOREVITZ, Justin
dc.contributor.authorBRUHL, Jeremy
dc.contributor.authorCOLLINS, Timothy
dc.contributor.authorFISCHER, Martin
dc.contributor.authorHODGINS, Kathryn
dc.contributor.authorHOLLIDAY, Jason
dc.contributor.authorINGVARSSON, Pär
dc.contributor.authorJANES, Jasmine
dc.contributor.authorKHANDAKER, Momena
dc.contributor.authorKOENIG, Daniel
dc.contributor.authorKREINER, Julia
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorKREMER, Antoine
dc.contributor.authorLASCOUX, Martin
hal.structure.identifierGénétique Physiologie et Systèmes d'Elevage [GenPhySE]
dc.contributor.authorLEROY, Thibault
dc.contributor.authorMILESI, Pascal
dc.contributor.authorMURRAY, Kevin
dc.contributor.authorPYHÄJÄRVI, Tanja
dc.contributor.authorRELLSTAB, Christian
dc.contributor.authorRIESEBERG, Loren
hal.structure.identifierLaboratoire des Interactions Plantes Microbes Environnement [LIPME]
dc.contributor.authorROUX, Fabrice
dc.contributor.authorSTINCHCOMBE, John
dc.contributor.authorTELFORD, Ian
dc.contributor.authorTODESCO, Marco
dc.contributor.authorTYRMI, Jaakko
dc.contributor.authorWANG, Baosheng
dc.contributor.authorWEIGEL, Detlef
dc.contributor.authorWILLI, Yvonne
dc.contributor.authorWRIGHT, Stephen
dc.contributor.authorZHOU, Lecong
dc.contributor.authorYEAMAN, Sam
dc.date.issued2024
dc.identifier.issn2397-334X
dc.description.abstractEnClosely related species often use the same genes to adapt to similar environments. However, we know little about why such genes possess increased adaptive potential and whether this is conserved across deeper evolutionary lineages. Adaptation to climate presents a natural laboratory to test these ideas, as even distantly related species must contend with similar stresses. Here, we re-analyse genomic data from thousands of individuals from 25 plant species as diverged as lodgepole pine and Arabidopsis (~300 Myr). We test for genetic repeatability based on within-species associations between allele frequencies in genes and variation in 21 climate variables. Our results demonstrate significant statistical evidence for genetic repeatability across deep time that is not expected under randomness, identifying a suite of 108 gene families (orthogroups) and gene functions that repeatedly drive local adaptation to climate. This set includes many orthogroups with well-known functions in abiotic stress response. Using gene co-expression networks to quantify pleiotropy, we find that orthogroups with stronger evidence for repeatability exhibit greater network centrality and broader expression across tissues (higher pleiotropy), contrary to the ‘cost of complexity’ theory. These gene families may be important in helping wild and crop species cope with future climate change, representing important candidates for future study.
dc.language.isoen
dc.publisherNature
dc.title.enThe genetic architecture of repeated local adaptation to climate in distantly related plants
dc.typeArticle de revue
dc.identifier.doi10.1038/s41559-024-02514-5
dc.subject.halSciences du Vivant [q-bio]/Génétique/Génétique des plantes
dc.subject.halSciences du Vivant [q-bio]/Biochimie, Biologie Moléculaire/Génomique, Transcriptomique et Protéomique [q-bio.GN]
dc.subject.halSciences du Vivant [q-bio]/Ecologie, Environnement/Bioclimatologie
bordeaux.journalNature Ecology & Evolution
bordeaux.page1933-1947
bordeaux.volume8
bordeaux.issue10
bordeaux.peerReviewedoui
hal.identifierhal-04760888
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-04760888v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Nature%20Ecology%20&%20Evolution&rft.date=2024&rft.volume=8&rft.issue=10&rft.spage=1933-1947&rft.epage=1933-1947&rft.eissn=2397-334X&rft.issn=2397-334X&rft.au=WHITING,%20James&BOOKER,%20Tom&ROUGEUX,%20Cl%C3%A9ment&LIND,%20Brandon&SINGH,%20Pooja&rft.genre=article


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