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hal.structure.identifierCroatian Agency for Agriculture and Food
dc.contributor.authorPLAVEC, Jelena
hal.structure.identifierCroatian Agency for Agriculture and Food
dc.contributor.authorIVANČAN, Goran
hal.structure.identifierDepartment of Biology, Faculty of Science, University of Zagreb
dc.contributor.authorŠKORIĆ, Dijana
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorFOISSAC, Xavier
hal.structure.identifierDepartment of Biology, Faculty of Science, University of Zagreb
dc.contributor.authorŠERUGA MUSIĆ, Martina
dc.date.accessioned2024-09-19T02:02:58Z
dc.date.available2024-09-19T02:02:58Z
dc.date.conference2024-05-14
dc.identifier.urihttps://oskar-bordeaux.fr/handle/20.500.12278/201671
dc.description.abstractEnINTRODUCTION 'Candidatus Phytoplasma solani’ (CPs), a phytoplasma endemic to the Euro-Mediterranean basin is associated with several plant diseases, including the grapevine yellows disease „bois noir“ (BN) (Quaglino et al. 2013). CPs spreads through highly complex disease cycle comprising several, possibly intermixed epidemiological networks which include diverse insect vectors and a broad range of host plant species. Hyalesthes obsoletus is considered to be the principal vector of CPs associated with BN. It feeds on various herbaceous plants but is most commonly associated with Convulvulus arvensis and Urtica dioica as hosts for its nymphs and adults (Langer and Maixner, 2004). A vector role in BN transmission has been proven also for Reptalus panzeri (Cvrković et al. 2014) and Dictyophara europea (Cvrković et al. 2022). The epidemiology of CPs is highly correlated with distribution of the host plants - tentative inoculum source in vineyards from which the insect vectors acquire phytoplasma. As different CPs strains have been shown to have different ecological reservoirs and pathways for spread, the genetic characterization of CPs strains is essential. The variability, prevalence, and distribution of the CPs genotypes from various hosts involved in the BN pathosystems was assessed by MLST approach to better document the BN situation in the Croatian vineyards.MATERIALS AND METHODS In the frame of a national survey programme, from 2009 to 2020, overall number of 3336 samples of grapevine, 89 weed and other plant samples, along with 267 of known and presumed CPs vectors from the suborder Auchenorrhyncha were collected from all Croatian grape-growing regions and tested for the presence of CPs. Total nucleic acids were extracted according to the previously described CTAB extraction protocol from grapevine or other plants (Plavec et al. 2019) or with the commercial kit OmniPrep™ (G-Biosciences, St. Louis, MO, USA) from individual insects. Samples were then analysed by triplex real-time PCR assay according to Pelletier et al. (2009). From most CPs foci in the country representative isolates were chosen and further analysed by MLST including tuf, secY, vmp1 and stamp genes (Schneider et al. 1997; Fialova et al. 2009; Cimerman et al. 2009; Fabre et al. 2011). Amplicons were sequenced in both directions followed by editing and assembly with Geneious (http://www.geneious.com/) and alignment with ClustalX 2.0. Phylogenetic analyses were conducted by MEGA 7 and nucleotide sequences attributed to sequence type by their comparison with sequences deposited in GenBank following the previously designed nomenclature (Foissac et al. 2013).RESULTS AND DISCUSSION The presence of CPs was confirmed in grapevine, Ailanthus altissima, Robinia pseudoacacia and Polygonum aviculare as well as in insects H. obsoletus, D. europaea and Cixius wagneri. The MLST analyses performed on 78 plant samples and 20 insect samples revealed two new genotypes for stamp and vmp1 genes, designated as ST59 and V28, respectively. Stamp, with its presumed important role in the interactions with insect vector was found to be a highly discriminative marker with 13 genotypes detected. Overall, analysis identified 28 different CPs MLST genotypes. The prevalent MLST genotype in grapevine CPsSqt21 (S6/ST6/V18/tuf-b2) found across central and north-western Croatia was affiliated to H. obsoletus and U. dioica. The other two most frequent genotypes were the U. dioica-associated CPsSqt28 (S39/ST46/V3/tuf-a) and the C. arvensis-associated CPsSqt2 (S1/ST9/V4/tuf-b1). Especially interesting was CPsSqt11 (S4/ST4/V28/tuf-b1) shared by two hosts, A. altissima and C. wagneri, which encompasses a new vmp1 genotype (V28). Moreover, three positive C. wagneri specimens found in different regions shared the same vmp1 genotype. Nevertheless, our results with prevalent MLST genotypes are in accordance with regional distribution of CPs strains in neighbouring countries (Mehle et al. 2022). Although the H. obsoletus is a principal vector of CPs in Croatia, our survey revealed that its population did not correlate with the distribution and high number of CPs positive plants. Even though this finding could be attributed to the limited insect sample number or locally determined interactions of hosts and vectors that favour adaptive mutations, the substantial number of MLST genotypes found indicates the co-existence of several independent epidemiological cycles. This is certainly a consequence of a unique geographical position of Croatia, bridging the different eco-climatic areas of central and south-eastern Europe. ACKNOWLEDGEMENTS This study was partially supported by Croatian Science Foundation grant no. UIP-2014-09-9744 and IP-2019-04-2469 and by the Ministry of Agriculture (National Survey Programme).REFERENCES Cimerman A, Pacifico D, Salar P, Marzachi C and Foissac X (2009). Striking diversity of vmp1, a variable gene encoding a putative membrane protein of the stolbur phytoplasma. Appl Environ Microbiol. 75:2951–2957. https://doi.org/10.1128/AEM.02613-08Cvrković T, Jović J, Mitrović M, Krstić O and Toševski I (2014). Experimental and molecular evidence of Reptalus panzeri as a natural vector of bois noir. Plant Pathol. 63:42–53. https://doi.org/10.1111/ppa.12080Cvrković T, Jović J, Krstić O, Marinković S, Jakovljević M, Mitrović M and Toševski I (2022). Epidemiological Role of Dictyophara europaea (Hemiptera: Dictyopharidae) in the Transmission of ‘Candidatus Phytoplasma solani’. Horticulturae. 8: 654. https://doi.org/10.3390/horticulturae8070654Fabre A, Danet JL and Foissac X (2011) The stolbur phytoplasma antigenic membrane protein gene stamp is submitted to diversifying positive selection. Gene. 472:37–41. https://doi.org/10.1016/j.gene.2010.10.012Fialová R, Válová P, Balakishiyeva G, Danet JL, Šafářová D, Foissac X and Navrátil M (2009). Genetic variability of stolbur phytoplasma in annual crop and wild plant species in south Moravia. J Plant Pathol. 91:411–416. http://www.jstor.org/stable/41998636.Foissac X, Carle P, Fabre A, Salar P, Danet JL and STOLBUR EUROMED Consortium. (2013). ‘Candidatus Phytoplasma solani’ genome project and genetic diversity in the Euro-Mediterranean basin. In Proceedings of the 3rd European Bois Noir Workshop: 20-21 March 2013; Barcelona, Spain. Edited by Torres E. Laviña A, Batlle. 11-13.Langer M and Maixner M (2004). Molecular characterisation of grapevine yellows associated phytoplasmas of the stolbur group based on RFLP analysis of non-ribosomal DNA. Vitis. 43:191–199. https://doi.org/10.5073/vitis.2004.43.191-199Mehle N, Kavčič S, Mermal S, Vidmar S, Pompe Novak M, Riedle-Bauer M, Brader G, Kladnik A and Dermastia M (2022). Geographical and Temporal Diversity of ‘Candidatus Phytoplasma solani’ in Wine-Growing Regions in Slovenia and Austria. Front Plant Sci. 13:889675.https://doi.org/10.3389/fpls.2022.889675 Pelletier C, Salar P, Gillet J, Cloquemin G, Very P, Foissac X, and Malemic-Maher S. (2009). Triplex real-time PCR assay for sensitive and simultaneous detection of grapevine phytoplasmas of the 16SrV and 16SrXII-A groups with an endogenous analytical control. Vitis. 48:87–95. https://doi.org/10.5073/vitis.2009.48.87-95Plavec J, Budinšćak Ž, Križanac I, Škorić D, Foissac X. and Šeruga Musić M (2019). Multilocus sequence typing reveals the presence of three distinct flavescence dorée phytoplasma genetic clusters in Croatian vineyards. Plant Pathol. 68:18-30. https://doi.org/10.1111/ppa.12934Quaglino F, Zhao Y, Casati P, Bulgari D, Bianco PA, Wei W and Davis RE (2013). ‘Candidatus Phytoplasma solani’, a novel taxon associated with stolbur and Bois Noir. Related diseases of plants. Inter J Syst Evol Microb. 63:2879–2894. https://doi.org/10.1099/ijs.0.044750-0Schneider B, Gibb KS and Seemüller E (1997). Sequence and RFLP analysis of the elongation factor Tu gene used in differentiation and classification of phytoplasmas. Microbiology. 143:3381–3389. https://doi.org/10.1099/00221287-143-10-3381
dc.language.isoen
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.source.titleProceedings of the Sixth European Bois noir workshop and first international Pro-AECOGY conference
dc.title.enGeographical and genetic diversity of 'Candidatus Phytoplasma solani' isolates in Croatian grape growing regions
dc.typeCommunication dans un congrès
dc.subject.halSciences du Vivant [q-bio]/Microbiologie et Parasitologie
bordeaux.hal.laboratoriesBiologie du Fruit & Pathologie (BFP) - UMR 1332*
bordeaux.institutionUniversité de Bordeaux
bordeaux.institutionINRAE
bordeaux.conference.titleSixth European Bois noir workshop and first international Pro-AECOGY conference
bordeaux.countryFR
bordeaux.title.proceedingProceedings of the Sixth European Bois noir workshop and first international Pro-AECOGY conference
bordeaux.conference.cityBordeaux
bordeaux.peerReviewedoui
hal.identifierhal-04701471
hal.version1
hal.invitednon
hal.proceedingsoui
hal.conference.organizerINRAE et Université de Bordeaux
hal.conference.end2024-05-16
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-04701471v1
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