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Novel Betanucleorhabdoviruses Infecting Elderberry (Sambucus nigra L.): Genome Characterization and Genetic Variability
| hal.structure.identifier | Palacky University Olomouc | |
| dc.contributor.author | ŠAFÁŘOVÁ, Dana | |
| hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
| dc.contributor.author | CANDRESSE, Thierry | |
| hal.structure.identifier | Palacky University Olomouc | |
| dc.contributor.author | VESELSKÁ, Jana | |
| hal.structure.identifier | Palacky University Olomouc | |
| dc.contributor.author | NAVRÁTIL, Milan | |
| dc.date.accessioned | 2024-09-04T02:06:46Z | |
| dc.date.available | 2024-09-04T02:06:46Z | |
| dc.date.issued | 2024-05-24 | |
| dc.identifier.issn | 2076-0817 | |
| dc.identifier.uri | https://oskar-bordeaux.fr/handle/20.500.12278/201413 | |
| dc.description.abstractEn | <div><p>The genus Betanucleorhabdovirus includes plant viruses with negative sense, non-segmented, single-stranded RNA genomes. Here, we characterized putative novel betanucleorhabdoviruses infecting a medically important plant, elderberry. Total RNA was purified from the leaves of several plants, ribodepleted and sequenced using the Illumina platform. Sequence data analysis led to the identification of thirteen contigs of approximately 13.5 kb, showing a genome structure (3 ′ -N-P-P3-M-G-L-5 ′ ) typical of plant rhabdoviruses. The detected isolates showed 69.4 to 98.9% pairwise nucleotide identity and had the highest identity among known viruses (64.7-65.9%) with tomato betanucleorhabdovirus 2. A detailed similarity analysis and a phylogenetic analysis allowed us to discriminate the elderberry isolates into five groups, each meeting the sequence-based ICTV demarcation criterion in the Betanucleorhabdovirus genus (lower than 75% identity for the complete genome). Hence, the detected viruses appear to represent five novel, closely related betanucleorhabdoviruses, tentatively named Sambucus betanucleorhabdovirus 1 to 5.</p></div> | |
| dc.language.iso | en | |
| dc.publisher | MDPI | |
| dc.rights.uri | http://creativecommons.org/licenses/by/ | |
| dc.subject.en | high-throughput sequencing | |
| dc.subject.en | plant rhabdovirus | |
| dc.subject.en | genetic diversity | |
| dc.subject.en | mixed infection | |
| dc.title.en | Novel Betanucleorhabdoviruses Infecting Elderberry (Sambucus nigra L.): Genome Characterization and Genetic Variability | |
| dc.type | Article de revue | |
| dc.identifier.doi | 10.3390/pathogens13060445 | |
| dc.subject.hal | Sciences du Vivant [q-bio] | |
| dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie | |
| bordeaux.journal | Pathogens | |
| bordeaux.page | 445 | |
| bordeaux.volume | 13 | |
| bordeaux.hal.laboratories | Biologie du Fruit & Pathologie (BFP) - UMR 1332 | * |
| bordeaux.issue | 6 | |
| bordeaux.institution | Université de Bordeaux | |
| bordeaux.institution | INRAE | |
| bordeaux.peerReviewed | oui | |
| hal.identifier | hal-04685362 | |
| hal.version | 1 | |
| hal.popular | non | |
| hal.audience | Internationale | |
| hal.origin.link | https://hal.archives-ouvertes.fr//hal-04685362v1 | |
| bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Pathogens&rft.date=2024-05-24&rft.volume=13&rft.issue=6&rft.spage=445&rft.epage=445&rft.eissn=2076-0817&rft.issn=2076-0817&rft.au=%C5%A0AF%C3%81%C5%98OV%C3%81,%20Dana&CANDRESSE,%20Thierry&VESELSK%C3%81,%20Jana&NAVR%C3%81TIL,%20Milan&rft.genre=article |
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