Afficher la notice abrégée

Metagenomic Next-Generation Sequencing (mNGS) Data Reveal the Phyllosphere Microbiome of Wheat Plants Infected by the Fungal Pathogen Zymoseptoria tritici

hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorBARROSO-BERGADÀ, Didac
hal.structure.identifierUMR Genome Transcriptome Platform of Bordeaux (PGTB), INRAE, Université de Bordeaux, 33610 Cestas, France
dc.contributor.authorMASSOT, Marie
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorVIGNOLLES, Noémie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorFAIVRE D'ARCIER, Julie
hal.structure.identifierUMR Genome Transcriptome Platform of Bordeaux (PGTB), INRAE, Université de Bordeaux, 33610 Cestas, France
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorCHANCEREL, Emilie
hal.structure.identifierUMR Genome Transcriptome Platform of Bordeaux (PGTB), INRAE, Université de Bordeaux, 33610 Cestas, France
dc.contributor.authorGUICHOUX, Erwan
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorWALKER, Anne-Sophie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
hal.structure.identifierUniversité de Bordeaux [UB]
dc.contributor.authorVACHER, Corinne
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorBOHAN, David
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorLAVAL, Valérie
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorSUFFERT, Frédéric
dc.date.issued2023-09
dc.description.abstractEnThe fungal pathogen Zymoseptoria tritici is the causal agent of Septoria tritici blotch (STB), a major wheat disease in Western Europe. Microorganisms inhabiting wheat leaves might act as beneficial, biocontrol, or facilitating agents that could limit or stimulate the development of Z. tritici. Improving our understanding of microbial communities in the wheat phyllosphere would lead to new insights into STB management. This article provides fungal and bacterial metabarcoding datasets obtained by sampling wheat leaves with and without symptoms caused by Z. tritici. Tissues were sampled from three commercial wheat varieties on three sampling dates during a cropping season. Weeds around wheat fields were sampled as well. In total, more than 450 leaf samples were collected. The pathogen Z. tritici was quantified using quantitative PCR. We provide the raw metabarcoding datasets, the amplicon sequence variant tables obtained after bioinformatic processing, the metadata associated with each sample (sampling date, wheat variety and tissue health condition), a preliminary descriptive analysis of the data, and the code used for bioinformatic and descriptive statistical analysis. [Formula: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license .
dc.language.isoen
dc.publisherAPS Publications
dc.title.enMetagenomic Next-Generation Sequencing (mNGS) Data Reveal the Phyllosphere Microbiome of Wheat Plants Infected by the Fungal Pathogen Zymoseptoria tritici
dc.typeArticle de revue
dc.identifier.doi10.1094/PBIOMES-02-22-0008-FI
dc.subject.halSciences du Vivant [q-bio]
bordeaux.journalPhytobiomes Journal
bordeaux.page281-287
bordeaux.volume7
bordeaux.issue2
bordeaux.peerReviewedoui
hal.identifierhal-04549200
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-04549200v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Phytobiomes%20Journal&rft.date=2023-09&rft.volume=7&rft.issue=2&rft.spage=281-287&rft.epage=281-287&rft.au=BARROSO-BERGAD%C3%80,%20Didac&MASSOT,%20Marie&VIGNOLLES,%20No%C3%A9mie&FAIVRE%20D'ARCIER,%20Julie&CHANCEREL,%20Emilie&rft.genre=article


Fichier(s) constituant ce document

FichiersTailleFormatVue

Il n'y a pas de fichiers associés à ce document.

Ce document figure dans la(les) collection(s) suivante(s)

Afficher la notice abrégée