Development of a set of SNP markers for population genetics of the sea rose, Pentapora fascialis
hal.structure.identifier | Laboratoire d'Ecogéochimie des environnements benthiques [LECOB] | |
dc.contributor.author | PADRÓN, Mariana | |
hal.structure.identifier | Génome et Transcriptome - Plateforme Génomique [ GeT-PlaGe] | |
dc.contributor.author | MILHES, M. | |
hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
dc.contributor.author | MASSOT, M. | |
hal.structure.identifier | Biodiversité, Gènes & Communautés [BioGeCo] | |
dc.contributor.author | GUICHOUX, Erwan | |
hal.structure.identifier | Laboratoire d'Ecogéochimie des environnements benthiques [LECOB] | |
dc.contributor.author | GUIZIEN, Katell | |
dc.date.created | 2023-08-11 | |
dc.date.issued | 2024-02-17 | |
dc.identifier.issn | 1877-7252 | |
dc.description.abstractEn | A set of single nucleotide polymorphisms (SNP) was developed from the transcriptome of 10 individuals of the sea rose Pentapora fascialis (Cheilostomata) collected in Banyuls-sur-Mer Bay (NW Mediterranean sea). 53042 putative SNPs were identified and mapped on a de novo assembled transcriptome. A selected set of 320 SNPs with highest coverage and uniquely mapped in the assembled transcriptome was tested using a MassARRAY System on 95 individuals sampled in natural rocks and artificial reefs distributed over a hundred kilometers in the NW Mediterranean (outisde Banyuls-sur-Mer Bay). A total of 177 SNPs were successfully genotyped and found to be polymorphic. Among these, 154 SNPs were in Hardy-Weinberg equilibrium over all samples, with significant linkage disequilibrium in only 21 pairs of SNPs. The newly developed loci will be a valuable tool for population genetics studies of this calcifying bryozoan species whose erect structure makes it an engineering species and a target for conservation plans. | |
dc.language.iso | en | |
dc.publisher | Springer | |
dc.subject.en | Pentapora fascialis | |
dc.subject.en | Single nucleotide polymorphism | |
dc.subject.en | MassARRAY | |
dc.subject.en | bryozoan | |
dc.title.en | Development of a set of SNP markers for population genetics of the sea rose, Pentapora fascialis | |
dc.type | Article de revue | |
dc.identifier.doi | 10.1007/s12686-024-01348-4 | |
dc.subject.hal | Sciences de l'environnement | |
dc.subject.hal | Sciences de l'environnement/Biodiversité et Ecologie | |
bordeaux.journal | Conservation Genetics Resources | |
bordeaux.peerReviewed | oui | |
hal.identifier | hal-04501018 | |
hal.version | 1 | |
hal.popular | non | |
hal.audience | Internationale | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-04501018v1 | |
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