hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
hal.structure.identifier | Plateforme Bordeaux Metabolome | |
dc.contributor.author | MOING, Annick | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | BERTON, Thierry | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | ROCH, Léa | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
hal.structure.identifier | Laboratoire de Recherche en Sciences Végétales [LRSV] | |
dc.contributor.author | DIARRASSOUBA, Salimata | |
hal.structure.identifier | Unité de recherche Mycologie et Sécurité des Aliments [MycSA] | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
hal.structure.identifier | Plateforme Bordeaux Metabolome | |
dc.contributor.author | BERNILLON, Stéphane | |
hal.structure.identifier | Max Planck Institute of Molecular Plant Physiology [MPI-MP] | |
dc.contributor.author | ARRIVAULT, Stéphanie | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
hal.structure.identifier | BioInformatique et BioStatistiques [CIRI] [BIBS] | |
hal.structure.identifier | Plateforme Bordeaux Metabolome | |
dc.contributor.author | DEBORDE, Catherine | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
hal.structure.identifier | Plateforme Bordeaux Metabolome | |
dc.contributor.author | MAUCOURT, Mickaël | |
hal.structure.identifier | Plateforme Bordeaux Metabolome | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | CABASSON, Cecile | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | BÉNARD, Camille | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
hal.structure.identifier | Plateforme Bordeaux Metabolome | |
dc.contributor.author | PRIGENT, Sylvain | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
hal.structure.identifier | Plateforme Bordeaux Metabolome | |
dc.contributor.author | JACOB, Daniel | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
hal.structure.identifier | Plateforme Bordeaux Metabolome | |
dc.contributor.author | GIBON, Yves | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | LEMAIRE-CHAMLEY, Martine | |
dc.date.issued | 2023-07-22 | |
dc.identifier.issn | 1471-2229 | |
dc.description.abstractEn | Background The composition of ripe fruits depends on various metabolites which content evolves greatly throughout fruit development and may be influenced by the environment. The corresponding metabolism regulations have been widely described in tomato during fruit growth and ripening. However, the regulation of other metabolites that do not show large changes in content have scarcely been studied. Results We analysed the metabolites of tomato fruits collected on different trusses during fruit development, using complementary analytical strategies. We identified the 22 least variable metabolites, based on their coefficients of variation. We first verified that they had a limited functional link with the least variable proteins and transcripts. We then posited that metabolite contents could be stabilized through complex regulations and combined their data with the quantitative proteome or transcriptome data, using sparse partial-least-square analyses. This showed shared regulations between several metabolites, which interestingly remained linked to early fruit development. We also examined regulations in specific metabolites using correlations with individual proteins and transcripts, which revealed that a stable metabolite does not always correlate with proteins and transcripts of its known related pathways. Conclusions The regulation of the least variable metabolites was then interpreted regarding their roles as hubs in metabolic pathways or as signalling molecules. | |
dc.description.sponsorship | Modélisation intégrative du fruit pour un système de sélection unifié | |
dc.description.sponsorship | Centre français de phénomique végétale | |
dc.description.sponsorship | Développement d'une infrastructure française distribuée pour la métabolomique dédiée à l'innovation | |
dc.language.iso | en | |
dc.publisher | BioMed Central | |
dc.rights.uri | http://creativecommons.org/licenses/by/ | |
dc.subject.en | Fruit | |
dc.subject.en | LC-MS | |
dc.subject.en | Metabolism regulation | |
dc.subject.en | Proton NMR | |
dc.subject.en | Omics | |
dc.subject.en | Solanum lycopersicum | |
dc.title.en | Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites | |
dc.type | Article de revue | |
dc.identifier.doi | 10.1186/s12870-023-04370-0 | |
dc.subject.hal | Sciences du Vivant [q-bio] | |
dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale | |
bordeaux.journal | BMC Plant Biology | |
bordeaux.volume | 23 | |
bordeaux.issue | 365 | |
bordeaux.peerReviewed | oui | |
hal.identifier | hal-04183193 | |
hal.version | 1 | |
hal.popular | non | |
hal.audience | Internationale | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-04183193v1 | |
bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=BMC%20Plant%20Biology&rft.date=2023-07-22&rft.volume=23&rft.issue=365&rft.eissn=1471-2229&rft.issn=1471-2229&rft.au=MOING,%20Annick&BERTON,%20Thierry&ROCH,%20L%C3%A9a&DIARRASSOUBA,%20Salimata&BERNILLON,%20St%C3%A9phane&rft.genre=article | |