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The tomato genome sequence provides insights into fleshy fruit evolution

hal.structure.identifierKazusa DNA Research Institute [KDRI]
dc.contributor.authorSATO, Shusei
hal.structure.identifierKazusa DNA Research Institute [KDRI]
dc.contributor.authorTABATA, Satoshi
hal.structure.identifierKazusa DNA Research Institute [KDRI]
dc.contributor.authorHIRAKAWA, Hideki
hal.structure.identifierKazusa DNA Research Institute [KDRI]
dc.contributor.authorASAMIZU, Erika
hal.structure.identifierKazusa DNA Research Institute [KDRI]
dc.contributor.authorSHIRASAWA, Kenta
hal.structure.identifierKazusa DNA Research Institute [KDRI]
dc.contributor.authorISOBE, Sachiko
hal.structure.identifierKazusa DNA Research Institute [KDRI]
dc.contributor.authorKANEKO, Takakazu
hal.structure.identifierKazusa DNA Research Institute [KDRI]
dc.contributor.authorNAKAMURA, Yasukazu
hal.structure.identifierKazusa DNA Research Institute [KDRI]
dc.contributor.authorSHIBATA, Daisuke
hal.structure.identifierKazusa DNA Research Institute [KDRI]
dc.contributor.authorAOKI, Koh
hal.structure.identifier454 Life Sciences
dc.contributor.authorEGHOLM, Michael
hal.structure.identifier454 Life Sciences
dc.contributor.authorKNIGHT, James
hal.structure.identifierAmplicon Express Inc.
dc.contributor.authorBOGDEN, Robert
hal.structure.identifierBeijing Academy of Agriculture and Forestry Sciences
hal.structure.identifierChinese Academy of Sciences [CAS]
dc.contributor.authorLI, Changbao
hal.structure.identifierBeijing Genomics Institute [Shenzhen] [BGI]
dc.contributor.authorSHUANG, Yang
hal.structure.identifierBeijing Genomics Institute [Shenzhen] [BGI]
dc.contributor.authorXU, Xun
hal.structure.identifierBeijing Genomics Institute [Shenzhen] [BGI]
dc.contributor.authorPAN, Shengkai
hal.structure.identifierBeijing Genomics Institute [Shenzhen] [BGI]
dc.contributor.authorCHENG, Shifeng
hal.structure.identifierBeijing Genomics Institute [Shenzhen] [BGI]
dc.contributor.authorLIU, Xin
hal.structure.identifierBeijing Genomics Institute [Shenzhen] [BGI]
dc.contributor.authorREN, Yuanuyan
hal.structure.identifierBeijing Genomics Institute [Shenzhen] [BGI]
dc.contributor.authorWANG, Jun
hal.structure.identifierBMR Genomics S.R.L.
dc.contributor.authorALBIERO, Alessandro
hal.structure.identifierBMR Genomics S.R.L.
dc.contributor.authorDAL PERO, Francesca
hal.structure.identifierBMR Genomics S.R.L.
dc.contributor.authorTODESCO, Sara
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorVAN ECK, Joyce
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorBUELS, Robert M.
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorBOMBARELY, Aureliano
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorGOSSELIN, Joseph R.
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorHUANG, Minyun
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorLETO, Jonathan
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorMENDA, Naama
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorSTRICKLER, Susan
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorMAO, Linyong
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorGAO, Shan
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorTECLE, Isaak Y
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorYORK, Thomas
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorZHENG, Yi
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorVREBALOV, Julia T.
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorLEE, Jemin
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorZHONG, Silin
hal.structure.identifierBoyce Thompson Institute [Ithaca]
dc.contributor.authorMUELLER, Lukas A.
hal.structure.identifierCentre for Biosystems Genomics
dc.contributor.authorSTIEKEMA, Willem J
hal.structure.identifierCentre for Genomic Regulation - Centre de Regulació Genòmica [Barcelona] [CRG]
dc.contributor.authorRIBECA, Paolo
hal.structure.identifierCentre for Genomic Regulation - Centre de Regulació Genòmica [Barcelona] [CRG]
dc.contributor.authorALIOTO, Tyler
hal.structure.identifierChina Agricultural University [CAU]
dc.contributor.authorYANG, Wencai
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorHUANG, Sanwen
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorDU, Yongchen
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorZHANG, Zhonghua
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorGAO, Jianchang
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorGUO, Yanmei
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorWANG, Xiaosuan
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorLI, Ying
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorHE, Jun
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorLI, Chuanyou
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorCHENG, Zhukuan
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorZUO, Jianru
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorREN, Jianfeng
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorZHAO, Jiuhai
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorYAN, Liuhua
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorJIANG, Hongling
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorWANG, Bao
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorLI, Hongshuang
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorLI, Zhenjun
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorFU, Fuyou
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorCHEN, Bingtang
hal.structure.identifierChinese Academy of Sciences [CAS]
dc.contributor.authorHAN, Bin
hal.structure.identifierChinese Academy of Sciences [CAS]
dc.contributor.authorFENG, Qi
hal.structure.identifierChinese Academy of Sciences [CAS]
dc.contributor.authorFAN, Danlin
hal.structure.identifierChinese Academy of Sciences [CAS]
dc.contributor.authorWANG, Ying
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
hal.structure.identifierInst Genet & Dev Biol, State Key Lab Plant Cell & Chromosome Engn
dc.contributor.authorLING, Hongqing
hal.structure.identifierChinese Academy of Agricultural Sciences [CAAS]
dc.contributor.authorXUE, Yongbiao
hal.structure.identifierCold Spring Harbor
dc.contributor.authorWARE, Doreen
hal.structure.identifierCold Spring Harbor
dc.contributor.authorMCCOMBIE, W. Richard
hal.structure.identifierCold Spring Harbor
dc.contributor.authorLIPPMAMN, Zachary B.
hal.structure.identifierCold Spring Harbor
dc.contributor.authorCHIA, Jer-Ming
hal.structure.identifierCold Spring Harbor
dc.contributor.authorJIANG, Ke
hal.structure.identifierCold Spring Harbor
dc.contributor.authorPASTERMAK, Shiran
hal.structure.identifierCold Spring Harbor
dc.contributor.authorGELLEY, Laura
hal.structure.identifierCold Spring Harbor
dc.contributor.authorKRAMER, Melissa
hal.structure.identifierColorado State University [Fort Collins] [CSU]
dc.contributor.authorANDERSON, Lorinda K.
hal.structure.identifierNational Taiwan University
dc.contributor.authorCHANG, Song-Bin
hal.structure.identifierColorado State University [Fort Collins] [CSU]
dc.contributor.authorROYER, Suzanne
hal.structure.identifierColorado State University [Fort Collins] [CSU]
dc.contributor.authorSHEARER, Lindsay A.
hal.structure.identifierColorado State University [Fort Collins] [CSU]
dc.contributor.authorSTACK, Stephen M.
dc.contributor.authorROSE, Jocelyn K. C.
dc.contributor.authorXU, Yimin
dc.contributor.authorEANNETTA, Nancy
dc.contributor.authorMATAS, Antonio J.
dc.contributor.authorMCQUINN, Ryan
dc.contributor.authorTANKSLEY, Steven D.
dc.contributor.authorCÂMARA, Francisco
hal.structure.identifierGénétique et Amélioration des Fruits et Légumes [GAFL]
dc.contributor.authorCAUSSE, Mathilde
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorROTHAN, Christophe
hal.structure.identifierUnité de Biométrie et Intelligence Artificielle (ancêtre de MIAT) [UBIA]
dc.contributor.authorSCHIEX, Thomas
hal.structure.identifierUnité de Biométrie et Intelligence Artificielle (ancêtre de MIAT) [UBIA]
dc.contributor.authorNOIROT, Céline
hal.structure.identifierCentre National de Ressources Génomiques Végétales [CNRGV]
dc.contributor.authorBELLEC, Arnaud
hal.structure.identifierUnité de Biométrie et Intelligence Artificielle (ancêtre de MIAT) [UBIA]
dc.contributor.authorKLOPP, Christophe
hal.structure.identifierCentre National de Ressources Génomiques Végétales [CNRGV]
dc.contributor.authorBERGES, Helene
hal.structure.identifierUnité de Biométrie et Intelligence Artificielle (ancêtre de MIAT) [UBIA]
dc.contributor.authorMARIETTE, Jérôme
dc.contributor.authorTOMATO GENOME CONSORTIUM, -
dc.date.issued2012
dc.identifier.issn0028-0836
dc.description.abstractEnTomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera(1) and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium(2), and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.
dc.language.isoen
dc.publisherNature Publishing Group
dc.subject.enLycopersicon-esculentum
dc.subject.engene
dc.subject.endiversification : arabidopsis
dc.subject.enpatterns
dc.subject.enortholog
dc.subject.enhistory
dc.subject.ensorghum
dc.subject.enpotato
dc.title.enThe tomato genome sequence provides insights into fleshy fruit evolution
dc.typeArticle de revue
dc.identifier.doi10.1038/nature11119
dc.subject.halSciences du Vivant [q-bio]
bordeaux.journalNature
bordeaux.page635-641
bordeaux.volume485
bordeaux.issue7400
bordeaux.peerReviewedoui
hal.identifierhal-04198562
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-04198562v1
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