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High genetic diversity suggests a long evolutionary history of plum pox virus‐M in Turkey

hal.structure.identifierErciyes University
dc.contributor.authorTEBER, S.
hal.structure.identifierErciyes University
dc.contributor.authorGÜRCAN, K.
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
dc.contributor.authorBREVET, M.
hal.structure.identifierNational Research Council of Italy | Consiglio Nazionale delle Ricerche [CNR]
dc.contributor.authorPALMISANO, F.
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorCANDRESSE, T.
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
dc.contributor.authorDALLOT, Sylvie
dc.date.issued2023
dc.identifier.issn0032-0862
dc.description.abstractEnThe genetic diversity and evolutionary history of the epidemic plum pox virus strain M (PPV-M) have been poorly studied. We sequenced the genomes of 69 PPV-M isolates selected from different Turkish regions. These new nearly full-length genomic sequences were analysed together with 21 previously reported Turkish sequences of the PPV-MIs clade and with 50 sequences of other PPV-M isolates collected worldwide, including four sequences of Albanian isolates. Major genomic features were maintained in all new PPV-M genomic sequences, with the highest divergence detected in the PIPO, P1 and CP proteins. Turkish PPV-M isolates displayed a high genetic diversity and grouped into two sister clades, one formed by PPV-MIs isolates only and a second clade consisting of the previously described PPV-Ma and PPV-Mb subclades. The combined diversity for PPV-M isolates (Europe, Japan and Turkey) reached to 0.022 +/- 0.001, which is slightly higher than the diversity of the globally distributed PPV-D strain (0.017 +/- 0.001). Likewise, the genetic diversity of PPV-M (0.020 +/- 0.001) in Turkey was found to be comparable to that observed for PPV-M isolates from other countries (0.021 +/- 0.001) and even marginally higher if considering partial genomic sequences that allow the inclusion of a much larger number of isolates and countries. Overall, the original distribution of PPV-MIs, which seems to be almost specific to Turkey, and the high genetic diversity of PPV-MIs and other Turkish PPV-M isolates suggest a long evolutionary history of M isolates in Turkey and position this country as a centre of diversity of PPV-M.
dc.language.isoen
dc.publisherWiley
dc.subject.encomplete genome
dc.subject.enmolecular epidemiology
dc.subject.enplant virus
dc.subject.enplum pox virus
dc.subject.ensharka
dc.subject.enstone fruits
dc.title.enHigh genetic diversity suggests a long evolutionary history of plum pox virus‐M in Turkey
dc.typeArticle de revue
dc.identifier.doi10.1111/ppa.13663
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie
bordeaux.journalPlant Pathology
bordeaux.page300-311
bordeaux.volume72
bordeaux.issue2
bordeaux.peerReviewedoui
hal.identifierhal-03842148
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-03842148v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Plant%20Pathology&rft.date=2023&rft.volume=72&rft.issue=2&rft.spage=300-311&rft.epage=300-311&rft.eissn=0032-0862&rft.issn=0032-0862&rft.au=TEBER,%20S.&G%C3%9CRCAN,%20K.&BREVET,%20M.&PALMISANO,%20F.&CANDRESSE,%20T.&rft.genre=article


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