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Characterizing microbial interactions in controlled and natural microbial communities

hal.structure.identifierPleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
hal.structure.identifierScience et Technologie du Lait et de l'Oeuf [STLO]
dc.contributor.authorLECOMTE, Maxime
hal.structure.identifierPleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorLABARTHE, Simon
hal.structure.identifierPleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
dc.contributor.authorSHERMAN, David James
hal.structure.identifierScience et Technologie du Lait et de l'Oeuf [STLO]
dc.contributor.authorFALENTIN, Hélène
hal.structure.identifierPleiade, from patterns to models in computational biodiversity and biotechnology [PLEIADE]
dc.contributor.authorFRIOUX, Clémence
dc.date.conference2022-05-16
dc.description.abstractEnThe massive development and use of multi omics data permits a better understanding of complex microbial ecosystems at the metabolic level. However, this data and their integration varies depending on the size and characteristics of the considered ecosystems. In this talk, I will discuss of two different approaches applied respectively to a controlled microbial community and natural communities in order to reveal putative bacterium-bacterium interactions. I will first describe how numerical optimisation of metabolic models constrained by genomics and metatranscriptomics data can accurately describe a cheese starter community. I will then detail a discrete method based on only genomic data aiming to characterize the competition and cooperation potentials in natural communities.
dc.language.isoen
dc.title.enCharacterizing microbial interactions in controlled and natural microbial communities
dc.typeCommunication dans un congrès
dc.subject.halInformatique [cs]
dc.subject.halMathématiques [math]
dc.subject.halSciences du Vivant [q-bio]/Alimentation et Nutrition
dc.subject.halSciences du Vivant [q-bio]/Bio-Informatique, Biologie Systémique [q-bio.QM]
bordeaux.conference.titleWorkshop SymBioDiversity
bordeaux.countryCL
bordeaux.conference.citySantiago
bordeaux.peerReviewedoui
hal.identifierhal-03857848
hal.version1
hal.invitednon
hal.proceedingsnon
hal.conference.end2022-05-17
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-03857848v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.au=LECOMTE,%20Maxime&LABARTHE,%20Simon&SHERMAN,%20David%20James&FALENTIN,%20H%C3%A9l%C3%A8ne&FRIOUX,%20Cl%C3%A9mence&rft.genre=unknown


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