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Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach

hal.structure.identifierThe University of Tennessee [Knoxville]
dc.contributor.authorYU, Jiali
hal.structure.identifierUniversity of Kentucky [UK]
dc.contributor.authorCONRAD, Anna
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorDECROOCQ, Véronique
hal.structure.identifierPennsylvania State University [Penn State]
dc.contributor.authorZHEBENTYAYEVA, Tetyana
hal.structure.identifierPennsylvania State University [Penn State]
dc.contributor.authorWILLIAMS, Daniel
hal.structure.identifierUnited States Department of Agriculture [USDA]
dc.contributor.authorBENNETT, Dennis
hal.structure.identifierGénétique et Amélioration des Fruits et Légumes [GAFL]
dc.contributor.authorROCH, Guillaume
hal.structure.identifierGénétique et Amélioration des Fruits et Légumes [GAFL]
dc.contributor.authorAUDERGON, Jean-Marc
hal.structure.identifierUnited States Department of Agriculture [USDA]
dc.contributor.authorDARDICK, Christopher
hal.structure.identifierUnited States Department of Agriculture [USDA]
dc.contributor.authorLIU, Zongrang
hal.structure.identifierUniversity of Kentucky [UK]
dc.contributor.authorABBOTT, Albert
dc.contributor.authorCONSIDINE, Michael
dc.contributor.authorYAMANE, Hisayo
dc.contributor.authorRÍOS, Gabino
dc.contributor.authorLEIDA, Carmen
hal.structure.identifierThe University of Tennessee [Knoxville]
dc.contributor.authorSTATON, Margaret
dc.date.issued2020
dc.identifier.issn1664-462X
dc.description.abstractEnDormancy is a physiological state that plants enter for winter hardiness. Environmental-induced dormancy onset and release in temperate perennials coordinate growth cessation and resumption, but how the entire process, especially chilling-dependent dormancy release and flowering, is regulated remains largely unclear. We utilized the transcriptome profiles of floral buds from fall to spring in apricot (Prunus armeniaca) genotypes with contrasting bloom dates and peach (Prunus persica) genotypes with contrasting chilling requirements (CR) to explore the genetic regulation of bud dormancy. We identified distinct gene expression programming patterns in endodormancy and ecodormancy that reproducibly occur between different genotypes and species. During the transition from endo-to eco-dormancy, 1,367 and 2,102 genes changed in expression in apricot and peach, respectively. Over 600 differentially expressed genes were shared in peach and apricot, including three DORMANCY ASSOCIATED MADS-box (DAM) genes (DAM4, DAM5, and DAM6). Of the shared genes, 99 are located within peach CR quantitative trait loci, suggesting these genes as candidates for dormancy regulation. Co-expression and functional analyses revealed that distinctive metabolic processes distinguish dormancy stages, with genes expressed during endodormancy involved in chromatin remodeling and reproduction, while the genes induced at ecodormancy were mainly related to pollen development and cell wall biosynthesis. Gene expression analyses between two Prunus species highlighted the conserved Frontiers in Plant Science | www.frontiersin.org
dc.description.sponsorshipGénomique comparative et fonctionnelle de la résistance à la sharka et des besoins en froid chez les arbres fruitiers à noyaux - ANR-11-CHEX-0002
dc.language.isoen
dc.publisherFrontiers
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.subjectPecher
dc.subjectabricotier
dc.subjectArbre fruitier à noyau
dc.subjectPrunus
dc.subject.enCo-expression network
dc.subject.enRNASeq
dc.subject.enbloom date
dc.subject.enChill requirement
dc.subject.enTranscriptome
dc.subject.enfloral buds
dc.subject.enDormancy
dc.title.enDistinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach
dc.typeArticle de revue
dc.identifier.doi10.3389/fpls.2020.00180
dc.subject.halSciences du Vivant [q-bio]
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie
bordeaux.journalFrontiers in Plant Science
bordeaux.page180
bordeaux.volume11
bordeaux.peerReviewedoui
hal.identifierhal-02534855
hal.version1
hal.popularnon
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02534855v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Frontiers%20in%20Plant%20Science&rft.date=2020&rft.volume=11&rft.spage=180&rft.epage=180&rft.eissn=1664-462X&rft.issn=1664-462X&rft.au=YU,%20Jiali&CONRAD,%20Anna&DECROOCQ,%20V%C3%A9ronique&ZHEBENTYAYEVA,%20Tetyana&WILLIAMS,%20Daniel&rft.genre=article


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