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High-throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago

hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorSCUSSEL, Sarah
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorCANDRESSE, Thierry
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorMARAIS, Armelle
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorCLAVERIE, Sohini
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorHOAREAU, Murielle
hal.structure.identifierInstitut National de la Recherche pour l'Agriculture, la Pêche et l'Environnement [INRAPE]
dc.contributor.authorAZALI, Hamza A.
hal.structure.identifierUnité de Pathologie Végétale [PV]
dc.contributor.authorVERDIN, Eric
hal.structure.identifierInstitut Jean-Pierre Bourgin [IJPB]
hal.structure.identifierUnité de Pathologie Végétale [PV]
dc.contributor.authorTEPFER, Mark
hal.structure.identifierBiologie et Génétique des Interactions Plante-Parasite [UMR BGPI]
dc.contributor.authorFILLOUX, Denis
hal.structure.identifierBiologie et Génétique des Interactions Plante-Parasite [UMR BGPI]
dc.contributor.authorFERNANDEZ, Emmanuel
hal.structure.identifierBiologie et Génétique des Interactions Plante-Parasite [UMR BGPI]
dc.contributor.authorROUMAGNAC, Philippe
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorROBÈNE, Isabelle
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorLEFEUVRE, Pierre
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorJOURDA, Cyril
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorROUX-CUVELIER, Michel
hal.structure.identifierPôle de Protection des Plantes
dc.contributor.authorLETT, Jean-Michel
dc.date.issued2019
dc.identifier.issn0304-8608
dc.description.abstractEnUsing high-throughput sequencing of small interfering RNAs (siRNAs), virion-associated nucleic acid (VANA), and double stranded RNAs (dsRNAs), we have determined the complete genome sequences of Comorian isolates of two ipomoviruses, cassava brown streak virus (CBSV) and a divergent isolate of Ugandan cassava brown streak virus (UCBSV-KM) representing a new strain of this virus. While the large ORF of CBSV shares the highest nucleotide sequence identity (95.9%) with a Tanzanian isolate of CBSV, the large UCBSV-KM ORF shares the highest nucleotide sequence identity (77.5%) with a Malawian isolate of UCBSV. This low value is near the species demarcation threshold for the family Potyviridae (<76%). Phylogenetic analysis confirms that UCBSV-KM represents a new lineage that is genetically distinct from the currently described UCBSV strains.
dc.language.isoen
dc.publisherSpringer Verlag
dc.title.enHigh-throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago
dc.typeArticle de revue
dc.identifier.doi10.1007/s00705-019-04228-7
dc.subject.halSciences du Vivant [q-bio]/Sciences agricoles
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie
dc.subject.halSciences du Vivant [q-bio]/Microbiologie et Parasitologie/Virologie
bordeaux.journalArchives of Virology
bordeaux.page2193–2196
bordeaux.volume164
bordeaux.issue8
bordeaux.peerReviewedoui
hal.identifierhal-02619935
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02619935v1
bordeaux.COinSctx_ver=Z39.88-2004&amp;rft_val_fmt=info:ofi/fmt:kev:mtx:journal&amp;rft.jtitle=Archives%20of%20Virology&amp;rft.date=2019&amp;rft.volume=164&amp;rft.issue=8&amp;rft.spage=2193%E2%80%932196&amp;rft.epage=2193%E2%80%932196&amp;rft.eissn=0304-8608&amp;rft.issn=0304-8608&amp;rft.au=SCUSSEL,%20Sarah&amp;CANDRESSE,%20Thierry&amp;MARAIS,%20Armelle&amp;CLAVERIE,%20Sohini&amp;HOAREAU,%20Murielle&amp;rft.genre=article


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