Molecular characterization of divergent grapevine Pinot gris virus isolates and their detection in Slovak and Czech grapevines.
| hal.structure.identifier | Slovak Academy of Sciences [SAS] | |
| dc.contributor.author | GLASA, Miroslav | |
| hal.structure.identifier | Slovak Academy of Sciences [SAS] | |
| dc.contributor.author | PREDAJŇA, Lukáš | |
| hal.structure.identifier | Crop research institute | |
| dc.contributor.author | KOMÍNEK, Petr | |
| hal.structure.identifier | Slovak Academy of Sciences [SAS] | |
| dc.contributor.author | NAGYOVÁ, Alžbeta | |
| hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
| dc.contributor.author | CANDRESSE, Thierry | |
| hal.structure.identifier | Instituto Valenciano de Investigaciones Agrarias - Institut Valencià d'Investigacions Agraries - Valencian Institute for agricultural Research [IVIA] | |
| dc.contributor.author | OLMOS, Antonio | |
| dc.date.issued | 2014 | |
| dc.identifier.issn | 0304-8608 | |
| dc.description.abstractEn | Analysis of complete genome sequences of three Slovak isolates of grapevine Pinot gris virus (GPGV) showed their low heterogeneity (reaching 1.7 %) and a close relationship to the Italian NC_015782 isolate (4.2-4.5 % divergence). Comparison of Slovak and Italian isolates revealed an unusual accumulation of 21 indel mutations in ORF1, resulting in a localized high divergence in the encoded amino acid sequences. An elevated divergence in the 5' extremity of the GPGV genomes is suggestive of a recombination between Slovak isolates and grapevine berry inner necrosis virus. RT-PCR allowed the frequent detection of closely related GPGV isolates in grapevines from Slovakia and the Czech Republic. | |
| dc.language.iso | en | |
| dc.publisher | Springer Verlag | |
| dc.subject.en | Trichovirus | |
| dc.subject.en | Next-generation sequencing | |
| dc.subject.en | Diversity | |
| dc.subject.en | Detection | |
| dc.title.en | Molecular characterization of divergent grapevine Pinot gris virus isolates and their detection in Slovak and Czech grapevines. | |
| dc.type | Article de revue | |
| dc.identifier.doi | 10.1007/s00705-014-2031-5 | |
| dc.subject.hal | Sciences du Vivant [q-bio]/Autre [q-bio.OT] | |
| bordeaux.journal | Archives of Virology | |
| bordeaux.page | 2103-2107 | |
| bordeaux.volume | 159 | |
| bordeaux.issue | 8 | |
| bordeaux.peerReviewed | oui | |
| hal.identifier | hal-02635271 | |
| hal.version | 1 | |
| hal.popular | non | |
| hal.audience | Internationale | |
| hal.origin.link | https://hal.archives-ouvertes.fr//hal-02635271v1 | |
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