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The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

dc.contributor.authorINTERNATIONAL PEACH GENOME INITIATIVE, .
hal.structure.identifierCentra di Ricerca per la Frutticoltura
dc.contributor.authorVERDE, Ignazio
hal.structure.identifierBiologie du fruit et pathologie [BFP]
hal.structure.identifierClemson University
dc.contributor.authorABBOTT, Albert
hal.structure.identifierIGA
dc.contributor.authorSCALABRIN, Simone
hal.structure.identifierWashington State University [WSU]
dc.contributor.authorJUNG, Sook
hal.structure.identifierUnited States Department of Energy
dc.contributor.authorSHU, Shengqiang
hal.structure.identifierIGA
dc.contributor.authorMARRONI, Fabio
hal.structure.identifierClemson University
dc.contributor.authorZHEBENTYAYEVA, Tatyana
hal.structure.identifierAgricultural Research Council [CRA]
dc.contributor.authorDETTORI, Maria Teresa
hal.structure.identifierUnited States Department of Energy
dc.contributor.authorGRIMWOOD, Jane
hal.structure.identifierIGA
dc.contributor.authorCATTONARO, Federica
hal.structure.identifierIGA
dc.contributor.authorZUCCOLO, Andrea
hal.structure.identifierParco Tecnologico Padano
dc.contributor.authorROSSINI, Laura
hal.structure.identifierUnited States Department of Energy
dc.contributor.authorJENKINS, Jerry
hal.structure.identifierAgricultural Research Council [CRA]
dc.contributor.authorVENDRAMIN, Elisa
hal.structure.identifierUniversidad de Chile = University of Chile [Santiago] [UCHILE]
dc.contributor.authorMEISEL, Lee A
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorDECROOCQ, Véronique
hal.structure.identifierNorth Carolina State University [Raleigh] [NC State]
dc.contributor.authorSOSINSKI, Bryon
hal.structure.identifierUnited States Department of Energy
dc.contributor.authorPROCHNIK, Simon
hal.structure.identifierUniversity of California [Berkeley] [UC Berkeley]
dc.contributor.authorMITROS, Therese
hal.structure.identifierIGA
dc.contributor.authorPOLICRITI, Alberto
hal.structure.identifierAgricultural Research Council [CRA]
dc.contributor.authorCIPRIANI, Guido
hal.structure.identifierAlma Mater Studiorum Università di Bologna = University of Bologna [UNIBO]
dc.contributor.authorDONDINI, Luca
hal.structure.identifierWashington State University [WSU]
dc.contributor.authorFICKLIN, Stephen
hal.structure.identifierUnited States Department of Energy
dc.contributor.authorGOODSTEIN, David M
hal.structure.identifierClemson University
dc.contributor.authorXUAN, Pengfei
hal.structure.identifierIGA
dc.contributor.authorDEL FABBRO, Cristian
hal.structure.identifierAgricultural Research Council [CRA]
dc.contributor.authorARAMINI, Valeria
hal.structure.identifierIGA
dc.contributor.authorCOPETTI, Dario
hal.structure.identifierUniversidad Andrés Bello [Santiago] [UNAB]
dc.contributor.authorGONZALEZ, Susana
hal.structure.identifierUniversità degli Studi di Milano = University of Milan [UNIMI]
dc.contributor.authorHORNER, David S
hal.structure.identifierUniversità degli Studi di Udine - University of Udine [Italie]
dc.contributor.authorFALCHI, Rachele
hal.structure.identifierUnited States Department of Energy
dc.contributor.authorLUCAS, Susan
hal.structure.identifierSSSA
dc.contributor.authorMICA, Erica
hal.structure.identifierUniversidad de Chile = University of Chile [Santiago] [UCHILE]
dc.contributor.authorMALDONADO, Jonathan
hal.structure.identifierParco Tecnologico Padano
dc.contributor.authorLAZZARI, Barbara
hal.structure.identifierClemson University
dc.contributor.authorBIELENBERG, Douglas
hal.structure.identifierUniversità degli Studi di Milano = University of Milan [UNIMI]
dc.contributor.authorPIRONA, Raul
hal.structure.identifierIGA
dc.contributor.authorMICULAN, Mara
hal.structure.identifierClemson University
dc.contributor.authorBARAKAT, Abdelali
hal.structure.identifierIGA
dc.contributor.authorTESTOLIN, Raffaele
hal.structure.identifierParco Tecnologico Padano
dc.contributor.authorSTELLA, Alessandra
hal.structure.identifierAlma Mater Studiorum Università di Bologna = University of Bologna [UNIBO]
dc.contributor.authorTARTARINI, Stefano
hal.structure.identifierSSSA
dc.contributor.authorTONUTTI, Pietro
hal.structure.identifierUniversitat de Barcelona [UB]
dc.contributor.authorARUS, Pere
hal.structure.identifierUniversidad Andrés Bello [Santiago] [UNAB]
dc.contributor.authorORELLANA, Ariel
hal.structure.identifierNational Research Council of Italy | Consiglio Nazionale delle Ricerche [CNR]
dc.contributor.authorWELLS, Christina
hal.structure.identifierWashington State University [WSU]
dc.contributor.authorMAIN, Dorrie
hal.structure.identifierUniversità degli Studi di Udine - University of Udine [Italie]
dc.contributor.authorVIZZOTTO, Giannina
hal.structure.identifierUniversidad de Chile = University of Chile [Santiago] [UCHILE]
dc.contributor.authorSILVA, Herman
hal.structure.identifierParco Tecnologico Padano
dc.contributor.authorSALAMINI, Francesco
hal.structure.identifierUnited States Department of Energy
dc.contributor.authorSCHMUTZ, Jeremy
hal.structure.identifierIGA
dc.contributor.authorMORGANTE, Michele
hal.structure.identifierUnited States Department of Energy
dc.contributor.authorROKHSAR, Daniel S
dc.date.issued2013
dc.identifier.issn1061-4036
dc.description.abstractEnRosaceae is the most important fruit-producing clade, and its key commercially relevant genera (Fragaria, Rosa, Rubus and Prunus) show broadly diverse growth habits, fruit types and compact diploid genomes. Peach, a diploid Prunus species, is one of the best genetically characterized deciduous trees. Here we describe the high-quality genome sequence of peach obtained from a completely homozygous genotype. We obtained a complete chromosome-scale assembly using Sanger whole-genome shotgun methods. We predicted 27,852 protein-coding genes, as well as noncoding RNAs. We investigated the path of peach domestication through whole-genome resequencing of 14 Prunus accessions. The analyses suggest major genetic bottlenecks that have substantially shaped peach genome diversity. Furthermore, comparative analyses showed that peach has not undergone recent whole-genome duplication, and even though the ancestral triplicated blocks in peach are fragmentary compared to those in grape, all seven paleosets of paralogs from the putative paleoancestor are detectable.
dc.language.isoen
dc.publisherNature Publishing Group
dc.title.enThe high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
dc.typeArticle de revue
dc.identifier.doi10.1038/ng.2586
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale
bordeaux.journalNature Genetics
bordeaux.page487-94
bordeaux.volume45
bordeaux.issue5
bordeaux.peerReviewedoui
hal.identifierhal-02651802
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02651802v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Nature%20Genetics&rft.date=2013&rft.volume=45&rft.issue=5&rft.spage=487-94&rft.epage=487-94&rft.eissn=1061-4036&rft.issn=1061-4036&rft.au=INTERNATIONAL%20PEACH%20GENOME%20INITIATIVE,%20.&VERDE,%20Ignazio&ABBOTT,%20Albert&SCALABRIN,%20Simone&JUNG,%20Sook&rft.genre=article


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