Deciphering the Genetic Architecture of Plant Virus Resistance by GWAS, State of the Art and Potential Advances
hal.structure.identifier | Génétique et Amélioration des Fruits et Légumes [GAFL] | |
hal.structure.identifier | Bayer Cropscience | |
dc.contributor.author | MONNOT, Severine | |
hal.structure.identifier | Génétique et Amélioration des Fruits et Légumes [GAFL] | |
dc.contributor.author | DESAINT, Henri | |
hal.structure.identifier | Génétique Quantitative et Evolution - Le Moulon (Génétique Végétale) [GQE-Le Moulon] | |
hal.structure.identifier | Mathématiques et Informatique Appliquées [MIA Paris-Saclay] | |
dc.contributor.author | MARY-HUARD, Tristan | |
hal.structure.identifier | Génétique Quantitative et Evolution - Le Moulon (Génétique Végétale) [GQE-Le Moulon] | |
dc.contributor.author | MOREAU, Laurence | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | SCHURDI-LEVRAUD, Valerie | |
hal.structure.identifier | Génétique et Amélioration des Fruits et Légumes [GAFL] | |
dc.contributor.author | BOISSOT, Nathalie | |
dc.date.issued | 2021-11 | |
dc.identifier.issn | 2073-4409 | |
dc.description.abstractEn | Growing virus resistant varieties is a highly effective means to avoid yield loss due to infection by many types of virus. The challenge is to be able to detect resistance donors within plant species diversity and then quickly introduce alleles conferring resistance into elite genetic backgrounds. Until now, mainly monogenic forms of resistance with major effects have been introduced in crops. Polygenic resistance is harder to map and introduce in susceptible genetic backgrounds, but it is likely more durable. Genome wide association studies (GWAS) offer an opportunity to accelerate mapping of both monogenic and polygenic resistance, but have seldom been implemented and described in the plant–virus interaction context. Yet, all of the 48 plant–virus GWAS published so far have successfully mapped QTLs involved in plant virus resistance. In this review, we analyzed general and specific GWAS issues regarding plant virus resistance. We have identified and described several key steps throughout the GWAS pipeline, from diversity panel assembly to GWAS result analyses. Based on the 48 published articles, we analyzed the impact of each key step on the GWAS power and showcase several GWAS methods tailored to all types of viruses. | |
dc.language.iso | en | |
dc.publisher | MDPI | |
dc.rights.uri | http://creativecommons.org/licenses/by/ | |
dc.subject | virologie végétale | |
dc.subject | virus phytopathogène | |
dc.subject.en | GWAS | |
dc.subject.en | virus | |
dc.subject.en | plant | |
dc.title.en | Deciphering the Genetic Architecture of Plant Virus Resistance by GWAS, State of the Art and Potential Advances | |
dc.type | Article de revue | |
dc.type | Article de synthèse | |
dc.identifier.doi | 10.3390/cells10113080 | |
dc.subject.hal | Sciences du Vivant [q-bio] | |
dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale | |
bordeaux.journal | Cells | |
bordeaux.page | 3080 | |
bordeaux.volume | 10 | |
bordeaux.issue | 11 | |
bordeaux.peerReviewed | oui | |
hal.identifier | hal-03424384 | |
hal.version | 1 | |
hal.popular | non | |
hal.audience | Internationale | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-03424384v1 | |
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