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Forest tree genomics: 10 achievements from the past 10 years and future prospects

hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorPLOMION, Christophe
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorBASTIEN, Catherine
hal.structure.identifierEcologie et Ecophysiologie Forestières [devient SILVA en 2018] [EEF]
dc.contributor.authorBOGEAT-TRIBOULOT, Marie-Béatrice
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorBOUFFIER, Laurent
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorDÉJARDIN, Annabelle
hal.structure.identifierInteractions Arbres-Microorganismes [IAM]
dc.contributor.authorDUPLESSIS, Sébastien
hal.structure.identifierEcologie des Forêts Méditerranéennes [URFM]
dc.contributor.authorFADY, Bruno
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorHEUERTZ, Myriam
hal.structure.identifierLaboratoire de Biologie des Ligneux et des Grandes Cultures [LBLGC]
dc.contributor.authorLE GAC, Anne-Laure
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorLE PROVOST, Grégoire
hal.structure.identifierLaboratoire de Physique et Physiologie Intégratives de l'Arbre Fruitier et Forestier [PIAF]
dc.contributor.authorLEGUÉ, Valérie
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorLELU-WALTER, Marie-Anne
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorLEPLÉ, Jean-Charles
hal.structure.identifierLaboratoire de Biologie des Ligneux et des Grandes Cultures [LBLGC]
dc.contributor.authorMAURY, Stéphane
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorMOREL, Alexandre
hal.structure.identifierEcologie des Forêts Méditerranéennes [URFM]
dc.contributor.authorODDOU-MURATORIO, Sylvie
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorPILATE, Gilles
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorSANCHEZ, Léopoldo
hal.structure.identifierEcologie des Forêts Méditerranéennes [URFM]
dc.contributor.authorSCOTTI, Ivan
hal.structure.identifierEcologie des Forêts Méditerranéennes [URFM]
dc.contributor.authorSCOTTI-SAINTAGNE, Caroline
hal.structure.identifierUnité de recherche Amélioration, Génétique et Physiologie Forestières [AGPF]
dc.contributor.authorSEGURA, Vincent
hal.structure.identifierInstitut Technologique Forêt Cellulose Bois-construction Ameublement [FCBA]
dc.contributor.authorTRONTIN, Jean-François
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorVACHER, Corinne
dc.date.issued2016
dc.identifier.issn1286-4560
dc.description.abstractEnThis review highlights some of the discoveries and applications made possible by “omics” technologies over the last 10 years and provides perspectives for pioneering research to increase our understanding of tree biology.ContextA decade after the first forest tree genome sequence was released into the public domain, the rapidly evolving genomics and bioinformatics toolbox has advanced our understanding of the structure, functioning, and evolution of forest tree genomes.Aims and methodsThis review highlights some of the discoveries and applications that “omics” technologies have made possible for forest trees over the past 10 years.ResultsIn this review, we start by our current understanding of genome evolution and intricacies of gene regulation for reproduction, development, and responses to biotic and abiotic stresses. We then skim over advances in interactome analysis and epigenomics, the knowledge of the extent of genetic variation within and between species, revealing micro- and macro-evolutionary processes and species history, together with the complex architecture of quantitative traits. We finally end with applications in genetic resource conservation and breeding.ConclusionThe knowledge gained through the use of these technologies has a huge potential impact for adapting forests to the main challenges they will have to face: changing demand from ecosystem services with potentially conflicting strategies in terms of conservation and use, as well as climate changes and associated threats. Genomics will undoubtedly play a major role over the next decade and beyond, not only to further understand the mechanisms underlying adaptation and evolution but also to develop and implement innovative management and policy actions to preserve the adaptability of natural forests and intensively managed plantations.
dc.description.sponsorshipPlateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur "
dc.description.sponsorshipScénarios pour la dynamique de la biodiversité des forêts européennes sous changement global identifier les points de basculement micro-evolutifs
dc.language.isoen
dc.publisherSpringer Nature (since 2011)/EDP Science (until 2010)
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.subject.enBreeding and conservation
dc.subject.enMicro-evolution
dc.subject.enInteractome
dc.subject.enEpigenetics
dc.subject.enForest trees
dc.subject.enGenomics
dc.subject.enDevelopmental biology
dc.title.enForest tree genomics: 10 achievements from the past 10 years and future prospects
dc.typeArticle de revue
dc.typeArticle de synthèse
dc.identifier.doi10.1007/s13595-015-0488-3
dc.subject.halSciences du Vivant [q-bio]
bordeaux.journalAnnals of Forest Science
bordeaux.page77-103
bordeaux.volume73
bordeaux.issue1
bordeaux.peerReviewedoui
hal.identifierhal-01330031
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-01330031v1
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