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Many interspecific chromosomal introgressions are highly prevalent in Holarctic Saccharomyces uvarum strains found in human-related fermentations

hal.structure.identifierÉcole Nationale Supérieure de Chimie et de Physique de Bordeaux (ENSCPB)
hal.structure.identifierInstitut des Sciences de la Vigne et du Vin (ISVV)
dc.contributor.authorALBERTIN, Warren
hal.structure.identifierInstitut des Sciences de la Vigne et du Vin (ISVV)
dc.contributor.authorCHERNOVA, Maria
hal.structure.identifierLaboratoire Bordelais de Recherche en Informatique [LaBRI]
hal.structure.identifierfrom patterns to models in computational biodiversity and biotechnology [PLEIADE]
dc.contributor.authorDURRENS, Pascal
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGUICHOUX, Erwan
hal.structure.identifierLaboratoire Bordelais de Recherche en Informatique [LaBRI]
hal.structure.identifierfrom patterns to models in computational biodiversity and biotechnology [PLEIADE]
dc.contributor.authorSHERMAN, David James
hal.structure.identifierBordeaux Sciences Agro [Gradignan]
hal.structure.identifierInstitut des Sciences de la Vigne et du Vin (ISVV)
dc.contributor.authorMASNEUF-POMAREDE, Isabelle
hal.structure.identifierInstitut des Sciences de la Vigne et du Vin (ISVV)
hal.structure.identifierBioLaffort [Floirac]
dc.contributor.authorMARULLO, Philippe
dc.date.issued2018-01
dc.identifier.issn0749-503X
dc.description.abstractEnIn the last two decades, the massive genome sequencing of strains belonging to the Saccharomyces genus revealed the complex reticulated evolution of this group. Among the various evolutionary mechanisms described, the introgression of large chromosomal regions resulting from interspecific hybridization has recently shed light on the Saccharomyces uvarum species. In this work we provide the de novo assembled genomes of four S. uvarum strains presenting more than 712 kb of introgressed loci inherited from both S. eubayanus and S. kudriavzevii species. In order to study the prevalence of such introgressions in a large population, we designed multiplexed PCR- markers able to survey the inheritance of 8 chromosomal regions. Our data confirm that introgressions are widely disseminated in Holarctic S. uvarum population and are more frequently found in strains isolated from human-related fermentations. According to the origin of the strains (nature, cider or wine related process) some loci are overrepresented suggesting their positive selection by human activity. Except one locus located on chromosome 7, the introgressions present a low level of heterozygozity similar to that observed for nine neutral markers (microsatellites). Finally, most of these loci tested showed an expected Mendelian segregation after meiosis and can recombined with their chromosomal counterpart in S. uvarum.
dc.language.isoen
dc.publisherWiley
dc.subject.enSaccharomyces uvarum
dc.subject.enCider
dc.subject.enMassARRAY
dc.subject.enSaccharomyces eubayanus
dc.subject.enWine
dc.subject.enIntrogression
dc.title.enMany interspecific chromosomal introgressions are highly prevalent in Holarctic Saccharomyces uvarum strains found in human-related fermentations
dc.typeArticle de revue
dc.identifier.doi10.1002/yea.3248
dc.subject.halInformatique [cs]/Bio-informatique [q-bio.QM]
dc.subject.halSciences du Vivant [q-bio]/Biochimie, Biologie Moléculaire
dc.subject.halSciences du Vivant [q-bio]/Génétique
bordeaux.journalYeast
bordeaux.page141-156
bordeaux.volume35
bordeaux.issue1
bordeaux.peerReviewedoui
hal.identifierhal-01585808
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-01585808v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Yeast&rft.date=2018-01&rft.volume=35&rft.issue=1&rft.spage=141-156&rft.epage=141-156&rft.eissn=0749-503X&rft.issn=0749-503X&rft.au=ALBERTIN,%20Warren&CHERNOVA,%20Maria&DURRENS,%20Pascal&GUICHOUX,%20Erwan&SHERMAN,%20David%20James&rft.genre=article


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