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High-Throughput DNA sequencing of ancient wood

hal.structure.identifierAnthropologie Moléculaire et Imagerie de Synthèse [AMIS]
dc.contributor.authorWAGNER, Stefanie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorLAGANE, Frédéric
hal.structure.identifierUniversity of Copenhagen = Københavns Universitet [UCPH]
dc.contributor.authorSEGUIN-ORLANDO, Andaine
hal.structure.identifierUniversity of Copenhagen = Københavns Universitet [UCPH]
dc.contributor.authorSCHUBERT, Mikkel
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorLEROY, Thibault
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGUICHOUX, Erwan
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorCHANCEREL, Emilie
hal.structure.identifierOdense Bys Museer
dc.contributor.authorBECH-HEBELSTRUP, Inger
hal.structure.identifierCentre de Recherche en Archéologie, Archéosciences, Histoire [CReAAH]
dc.contributor.authorBERNARD, Vincent
hal.structure.identifierCentre de Recherche en Archéologie, Archéosciences, Histoire [CReAAH]
hal.structure.identifierDirection Régionale des Affaires Culturelles - Normandie [DRAC Normandie]
dc.contributor.authorBILLARD, Cyrille
hal.structure.identifierDépartement des Recherches Archéologiques Subaquatiques et Sous-Marines [Marseille] [DRASSM]
hal.structure.identifierEnvironnements, Dynamiques et Territoires de Montagne [EDYTEM]
dc.contributor.authorBILLAUD, Yves
dc.contributor.authorBOLLIGER, Matthias
hal.structure.identifierArchéologie et histoire ancienne : Méditerranée - Europe [ARCHIMEDE]
dc.contributor.authorCROUTSCH, Christophe
hal.structure.identifierEnvironnements et Paléoenvironnements OCéaniques [EPOC]
dc.contributor.authorEYNAUD, Frédérique
hal.structure.identifierDeutsches Archäologisches Institut [DAI]
dc.contributor.authorHEUSSNER, Karl Uwe
dc.contributor.authorKÖNINGER, Joachim
hal.structure.identifierCentre d'études en archéologie nautique
dc.contributor.authorLANGENEGGER, Fabien
hal.structure.identifierDépartement des Recherches Archéologiques Subaquatiques et Sous-Marines [Marseille] [DRASSM]
dc.contributor.authorLEROY, Frédéric
hal.structure.identifierDépartement des Recherches Archéologiques Subaquatiques et Sous-Marines [Marseille] [DRASSM]
dc.contributor.authorLIMA, Christine
hal.structure.identifierDendrodata s.a.s.
dc.contributor.authorMARTINELLI, Nicoletta
hal.structure.identifierMaritime Archaeology Trust
dc.contributor.authorMOMBER, Garry
hal.structure.identifierState Office for cultural Heritage Baden-Wuerttemberg
dc.contributor.authorBILLAMBOZ, André
hal.structure.identifierState Office for cultural Heritage Baden-Wuerttemberg
dc.contributor.authorNELLE, Oliver
hal.structure.identifierUniversitat Autònoma de Barcelona = Autonomous University of Barcelona = Universidad Autónoma de Barcelona [UAB]
dc.contributor.authorPALOMO, Antoni
hal.structure.identifierUniversitat Autònoma de Barcelona = Autonomous University of Barcelona = Universidad Autónoma de Barcelona [UAB]
dc.contributor.authorPIQUÉ, Raquel
dc.contributor.authorRAMSTEIN, Marianne
dc.contributor.authorSCHWEICHEL, Roswitha
dc.contributor.authorSTÄUBLE, Harald
hal.structure.identifierAlbert-Ludwigs-Universität Freiburg = University of Freiburg
dc.contributor.authorTEGEL, Willy
hal.structure.identifierConsejo Superior de Investigaciones Cientificas [España] = Spanish National Research Council [Spain] [CSIC]
dc.contributor.authorTERRADAS, Xavier
hal.structure.identifierAusonius-Institut de recherche sur l'Antiquité et le Moyen âge
dc.contributor.authorVERDIN, Florence
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorPLOMION, Christophe
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorKREMER, Antoine
hal.structure.identifierAnthropologie Moléculaire et Imagerie de Synthèse [AMIS]
dc.contributor.authorORLANDO, Ludovic
dc.date.issued2018-03
dc.identifier.issn0962-1083
dc.description.abstractEnReconstructing the colonization and demographic dynamics that gave rise to extant forests is essential to forecasts of forest responses to environmental changes. Classical approaches to map how population of trees changed through space and time largely rely on pollen distribution patterns, with only a limited number of studies exploiting DNA molecules preserved in wooden tree archaeological and subfossil remains. Here, we advance such analyses by applying high-throughput (HTS) DNA sequencing to wood archaeological and subfossil material for the first time, using a comprehensive sample of 167 European white oak waterlogged remains spanning a large temporal (from 550 to 9,800 years) and geographical range across Europe. The successful characterization of the endogenous DNA and exogenous microbial DNA of 140 (~83%) samples helped the identification of environmental conditions favouring long-term DNA preservation in wood remains, and started to unveil the first trends in the DNA decay process in wood material. Additionally, the maternally inherited chloroplast haplotypes of 21 samples from three periods of forest human-induced use (Neolithic, Bronze Age and Middle Ages) were found to be consistent with those of modern populations growing in the same geographic areas. Our work paves the way for further studies aiming at using ancient DNA preserved in wood to reconstruct the micro-evolutionary response of trees to climate change and human forest management.
dc.description.sponsorshipPlateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur "
dc.language.isoen
dc.publisherWiley
dc.subject.enoak
dc.subject.enQuercus petraea/robur
dc.subject.enchloroplast DNA
dc.subject.enancient DNA
dc.subject.enchloroplast
dc.subject.endegradation
dc.subject.entemperate trees
dc.title.enHigh-Throughput DNA sequencing of ancient wood
dc.typeArticle de revue
dc.identifier.doi10.1111/mec.14514
dc.subject.halSciences de l'environnement/Biodiversité et Ecologie
dc.subject.halSciences du Vivant [q-bio]/Génétique/Génétique des plantes
dc.subject.halSciences de l'Homme et Société/Archéologie et Préhistoire
dc.description.sponsorshipEuropeFrom Holocene to Anthropocene: the pace of microevolution in trees
bordeaux.journalMolecular Ecology
bordeaux.page1138-1154
bordeaux.volume27
bordeaux.issue5
bordeaux.peerReviewedoui
hal.identifierhal-01783724
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-01783724v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Molecular%20Ecology&rft.date=2018-03&rft.volume=27&rft.issue=5&rft.spage=1138-1154&rft.epage=1138-1154&rft.eissn=0962-1083&rft.issn=0962-1083&rft.au=WAGNER,%20Stefanie&LAGANE,%20Fr%C3%A9d%C3%A9ric&SEGUIN-ORLANDO,%20Andaine&SCHUBERT,%20Mikkel&LEROY,%20Thibault&rft.genre=article


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