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CReasPy-Cloning: A Method for Simultaneous Cloning and Engineering of Megabase-Sized Genomes in Yeast Using the CRISPR-Cas9 System.

hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorRUIZ, Estelle
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorTALENTON, Vincent
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorDUBRANA, Marie-Pierre
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorGUESDON, Gabrielle
hal.structure.identifierBarcelona Institute of Science and Technology [BIST]
dc.contributor.authorLLUCH-SENAR, Maria
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorSALIN, Franck
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorSIRAND-PUGNET, Pascal
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorARFI, Yonathan
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorLARTIGUE, Carole
dc.date.issued2019
dc.identifier.issn2161-5063
dc.description.abstractEnOver the past decade, a new strategy was developed to bypass the difficulties to genetically engineer some microbial species by transferring (or “cloning”) their genome into another organism that is amenable to efficient genetic modifications and therefore acts as a living workbench. As such, the yeast Saccharomyces cerevisiae has been used to clone and engineer genomes from viruses, bacteria, and algae. The cloning step requires the insertion of yeast genetic elements in the genome of interest, in order to drive its replication and maintenance as an artificial chromosome in the host cell. Current methods used to introduce these genetic elements are still unsatisfactory, due either to their random nature (transposon) or the requirement for unique restriction sites at specific positions (TAR cloning). Here we describe the CReasPy-cloning, a new method that combines both the ability of Cas9 to cleave DNA at a user-specified locus and the yeast’s highly efficient homologous recombination to simultaneously clone and engineer a bacterial chromosome in yeast. Using the 0.816 Mbp genome of Mycoplasma pneumoniae as a proof of concept, we demonstrate that our method can be used to introduce the yeast genetic element at any location in the bacterial chromosome while simultaneously deleting various genes or group of genes. We also show that CReasPy-cloning can be used to edit up to three independent genomic loci at the same time with an efficiency high enough to warrant the screening of a small (<50) number of clones, allowing for significantly shortened genome engineering cycle times.
dc.language.isoen
dc.publisherAmerican Chemical Society
dc.subjectCRISPR-Cas9
dc.subjectSaccharomyces cerevisiae
dc.subjectgenome transplantation
dc.subject.engenome cloning
dc.subject.engenome editing
dc.subject.enmycoplasma
dc.title.enCReasPy-Cloning: A Method for Simultaneous Cloning and Engineering of Megabase-Sized Genomes in Yeast Using the CRISPR-Cas9 System.
dc.typeArticle de revue
dc.identifier.doi10.1021/acssynbio.9b00224
dc.subject.halSciences du Vivant [q-bio]/Médecine humaine et pathologie
bordeaux.journalACS Synthetic Biology
bordeaux.page2547-2557
bordeaux.volume8
bordeaux.issue11
bordeaux.peerReviewedoui
hal.identifierhal-02619981
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02619981v1
bordeaux.COinSctx_ver=Z39.88-2004&amp;rft_val_fmt=info:ofi/fmt:kev:mtx:journal&amp;rft.jtitle=ACS%20Synthetic%20Biology&amp;rft.date=2019&amp;rft.volume=8&amp;rft.issue=11&amp;rft.spage=2547-2557&amp;rft.epage=2547-2557&amp;rft.eissn=2161-5063&amp;rft.issn=2161-5063&amp;rft.au=RUIZ,%20Estelle&amp;TALENTON,%20Vincent&amp;DUBRANA,%20Marie-Pierre&amp;GUESDON,%20Gabrielle&amp;LLUCH-SENAR,%20Maria&amp;rft.genre=article


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