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Towards decoding the conifer giga-genome

hal.structure.identifierUniversité Laval [Québec] [ULaval]
dc.contributor.authorMACKAY, John
hal.structure.identifierUniversity of Georgia [USA]
dc.contributor.authorDEAN, Jeffrey F. D.
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorPLOMION, Christophe
hal.structure.identifierMississippi State University [Mississippi]
dc.contributor.authorPETERSON, Daniel G.
hal.structure.identifierUniversidad de Málaga [Málaga] = University of Málaga [Málaga]
dc.contributor.authorCÁNOVAS, Francisco M.
hal.structure.identifierUniversité Laval [Québec] [ULaval]
dc.contributor.authorPAVY, Nathalie
hal.structure.identifierUmeå University, Sweden
dc.contributor.authorINGVARSSON, Pär K.
hal.structure.identifierDepartment of Biology and Biocenter Oulu
dc.contributor.authorSAVOLAINEN, Outi
hal.structure.identifierAustrian Institute of Technology [AIT]
dc.contributor.authorFLUCH, Silvia
hal.structure.identifierBioversity International [Montpellier]
dc.contributor.authorVINCETI, Barbara
hal.structure.identifierUniversidad de Alcalá - University of Alcalá [UAH]
dc.contributor.authorABARCA, Dolores
hal.structure.identifierUniversidad de Alcalá - University of Alcalá [UAH]
dc.contributor.authorDÍAZ-SALA, Carmen
hal.structure.identifierInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria = National Institute for Agricultural and Food Research and Technology [INIA]
dc.contributor.authorCERVERA, María-Teresa
dc.date.issued2012
dc.identifier.issn0167-4412
dc.description.abstractEnSeveral new initiatives have been launched recently to sequence conifer genomes including pines, spruces and Douglas-fir. Owing to the very large genome sizes ranging from 18 to 35 gigabases, sequencing even a single conifer genome had been considered unattainable until the recent throughput increases and cost reductions afforded by next generation sequencers. The purpose of this review is to describe the context for these new initiatives. A knowledge foundation has been acquired in several conifers of commercial and ecological interest through large-scale cDNA analyses, construction of genetic maps and gene mapping studies aiming to link phenotype and genotype. Exploratory sequencing in pines and spruces have pointed out some of the unique properties of these giga-genomes and suggested strategies that may be needed to extract value from their sequencing. The hope is that recent and pending developments in sequencing technology will contribute to rapidly filling the knowledge vacuum surrounding their structure, contents and evolution. Researchers are also making plans to use comparative analyses that will help to turn the data into a valuable resource for enhancing and protecting the world's conifer forests.
dc.language.isoen
dc.publisherSpringer Verlag (Germany)
dc.subjectfunctional genomics
dc.subjectcomparative genomics
dc.subject.enconifers
dc.subject.engiga-genome sequencing
dc.subject.enintegrative studies
dc.title.enTowards decoding the conifer giga-genome
dc.typeArticle de revue
dc.identifier.doi10.1007/s11103-012-9961-7
dc.subject.halSciences du Vivant [q-bio]
bordeaux.journalPlant Molecular Biology
bordeaux.page555-569
bordeaux.volume80
bordeaux.issue6
bordeaux.peerReviewedoui
hal.identifierhal-02646567
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02646567v1
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