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SNP Markers as a successful molecular tool for assessing species identity and geographic origin of trees in the economically important South American legume Genus Dipteryx

hal.structure.identifierInstituto de Investigaciones de la Amazonía Peruana [IIAP]
dc.contributor.authorCORONADO, Eurídice Honorio
hal.structure.identifierThünen Institute of Forest Genetics
dc.contributor.authorBLANC-JOLIVET, Céline
hal.structure.identifierThünen Institute of Forest Genetics
dc.contributor.authorMADER, Malte
hal.structure.identifierInstituto de Investigaciones de la Amazonía Peruana [IIAP]
dc.contributor.authorGARCÍA-DÁVILA, Carmen
hal.structure.identifierInstituto de Investigaciones de la Amazonía Peruana [IIAP]
dc.contributor.authorALDANA GOMERO, David
hal.structure.identifierInstituto de Investigaciones de la Amazonía Peruana [IIAP]
dc.contributor.authorDEL CASTILLO TORRES, Dennis
hal.structure.identifierInstituto de Investigaciones de la Amazonía Peruana [IIAP]
dc.contributor.authorFLORES LLAMPAZO, Gerardo
hal.structure.identifierInstituto de Investigaciones de la Amazonía Peruana [IIAP]
dc.contributor.authorHIDALGO PIZANGO, Gabriel
hal.structure.identifierInstituto Florestal de São Paulo
dc.contributor.authorSEBBENN, Alexandre
hal.structure.identifierUniversidade Estadual Paulista Júlio de Mesquita Filho = São Paulo State University [UNESP]
dc.contributor.authorMEYER-SAND, Barbara
hal.structure.identifierUniversidad Autonoma Gabriel René Moreno
dc.contributor.authorPAREDES-VILLANUEVA, Kathelyn
hal.structure.identifierSchool of Biological Sciences [Bangor]
hal.structure.identifierEcologie des forêts de Guyane [UMR ECOFOG]
dc.contributor.authorTYSKLIND, Niklas
hal.structure.identifierEcologie des forêts de Guyane [ECOFOG]
dc.contributor.authorTROISPOUX, Valérie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorMASSOT, Marie
hal.structure.identifierInstituto de Pesquisas Jardim Botanico do Rio de Janeiro [JBRJ]
dc.contributor.authorCARVALHO, Catarina
hal.structure.identifierInstituto de Pesquisas Jardim Botanico do Rio de Janeiro [JBRJ]
dc.contributor.authorDE LIMA, Haroldo
hal.structure.identifierUniversidade Federal da Bahia = Federal University of Bahia [UFBA]
dc.contributor.authorCARDOSO, Domingos
hal.structure.identifierThünen Institute of Forest Genetics
dc.contributor.authorDEGEN, Bernd
dc.date.issued2020-05-13
dc.identifier.issn0022-1503
dc.description.abstractEnDipteryx timber has been heavily exploited in South America since 2000s due to the increasing international demand for hardwood. Developing tools for the genetic identification of Dipteryx species and their geographical origin can help to promote legal trading of timber. A collection of 800 individual trees, belonging to 6 different Dipteryx species, was genotyped based on 171 molecular markers. After the exclusion of markers out of Hardy Weinberg equilibrium or with no polymorphism or low amplification, 83 nuclear, 29 chloroplast, 13 mitochondrial single nucleotide polymorphisms (SNPs), and 2 chloroplast and 5 mitochondrial INDELS remained. Six genetic groups were identified using Bayesian Structure analyses of the nuclear SNPs, which corresponded to the different Dipteryx species collected in the field. Seventeen highly informative markers were identified as suitable for species identification and obtained self-assignment success rates to species level of 78-96%. An additional set of 15 molecular markers was selected to determine the different genetic clusters found in Dipteryx odorata and Dipteryx ferrea, obtaining self-assignment success rates of 91-100%. The success to assign samples to the correct country of origin using all or only the informative markers improved when using the nearest neighbor approach (69-92%) compared to the Bayesian approach (33-80%). While nuclear and chloroplast SNPs were more suitable for differentiating the different Dipteryx species, mitochondrial SNPs were ideal for determining the genetic clusters of D. odorata and D. ferrea. These 32 selected SNPs will be invaluable genetic tools for the accurate identification of species and country of origin of Dipteryx timber.
dc.description.sponsorshipPlateforme d'Innovation " Forêt-Bois-Fibre-Biomasse du Futur "
dc.description.sponsorshipCEnter of the study of Biodiversity in Amazonia
dc.language.isoen
dc.publisherOxford University Press (OUP)
dc.subject.enCumaru
dc.subject.engenetic assignment
dc.subject.enLeguminosae
dc.subject.entimber verification
dc.title.enSNP Markers as a successful molecular tool for assessing species identity and geographic origin of trees in the economically important South American legume Genus Dipteryx
dc.typeArticle de revue
dc.identifier.doi10.1093/jhered/esaa011
dc.subject.halSciences du Vivant [q-bio]/Génétique/Génétique des populations [q-bio.PE]
dc.subject.halSciences du Vivant [q-bio]/Génétique/Génétique des plantes
dc.subject.halSciences du Vivant [q-bio]/Sciences agricoles/Sylviculture, foresterie
bordeaux.journalJournal of Heredity
bordeaux.page346-356
bordeaux.volume111
bordeaux.issue4
bordeaux.peerReviewedoui
hal.identifierhal-02936018
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02936018v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Journal%20of%20Heredity&rft.date=2020-05-13&rft.volume=111&rft.issue=4&rft.spage=346-356&rft.epage=346-356&rft.eissn=0022-1503&rft.issn=0022-1503&rft.au=CORONADO,%20Eur%C3%ADdice%20Honorio&BLANC-JOLIVET,%20C%C3%A9line&MADER,%20Malte&GARC%C3%8DA-D%C3%81VILA,%20Carmen&ALDANA%20GOMERO,%20David&rft.genre=article


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