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Metagenomic next⁃generation sequencing (mNGS) data reveals the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici

hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorBARROSO-BERGADÀ, Didac
hal.structure.identifierSanté et agroécologie du vignoble [UMR SAVE]
dc.contributor.authorMASSOT, Marie
hal.structure.identifierMICrobiologie de l'ALImentation au Service de la Santé [MICALIS]
hal.structure.identifierCIRM-Levures
dc.contributor.authorVIGNOLLES, Noémie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorFAIVRE D'ARCIER, Julie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorCHANCEREL, Emilie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGUICHOUX, Erwan
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorWALKER, Anne-Sophie
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorVACHER, Corinne
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorBOHAN, David
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorLAVAL, Valérie
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorSUFFERT, Frédéric
dc.date.issued2022-05-26
dc.description.abstractEnThe fungal pathogen Zymoseptoria tritici is the causal agent of Septoria tritici blotch (STB), a major wheat disease in Western Europe. Microorganisms inhabiting wheat leaves might act as beneficial, biocontrol or facilitating agents that could limit or stimulate the development of Z. tritici. Improving our understanding of microbial communities in the wheat phyllosphere would lead to new insights into STB management. This resource announcement provides fungal and bacterial metabarcoding datasets obtained by sampling wheat leaves with and without symptoms caused by Z. tritici. Tissues were sampled from three commercial wheat varieties on three sampling dates during a cropping season. Weeds around wheat fields were sampled as well. In total, more than 450 leaf samples were collected. The pathogen Z. tritici was quantified using qPCR. We provide the raw metabarcoding datasets, the Amplicon Sequence Variant (ASV) tables obtained after bioinformatic processing, the metadata associated to each sample (sampling date, wheat variety and tissue health condition), a preliminary descriptive analysis of the data, and the code used for bioinformatic and descriptive statistical analysis.
dc.description.sponsorshipBiosurveillance Next-Gen des changements dans la structure et le fonctionnement des écosystèmes
dc.description.sponsorshipEcole Universitaire de Recherche de Sciences des Plantes de Paris-Saclay - ANR-17-EURE-0007
dc.language.isoen
dc.publisherAPS Publications
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/
dc.subject.encommunity succession
dc.subject.enfungal pathogen
dc.subject.enleaf microbiota
dc.subject.enmicrobial diversity
dc.subject.enmicrobiome
dc.subject.enphyllosphere
dc.subject.enwheat
dc.subject.encommunity succession
dc.title.enMetagenomic next⁃generation sequencing (mNGS) data reveals the phyllosphere microbiome of wheat plants infected by the fungal pathogen Zymoseptoria tritici
dc.typeArticle de revue
dc.identifier.doi10.1094/PBIOMES-02-22-0008-FI
dc.subject.halSciences de l'environnement/Biodiversité et Ecologie
dc.subject.halSciences du Vivant [q-bio]/Sciences agricoles
bordeaux.journalPhytobiomes Journal
bordeaux.page281-287
bordeaux.volume7
bordeaux.issue2
bordeaux.peerReviewedoui
hal.identifierhal-03689876
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-03689876v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Phytobiomes%20Journal&rft.date=2022-05-26&rft.volume=7&rft.issue=2&rft.spage=281-287&rft.epage=281-287&rft.au=BARROSO-BERGAD%C3%80,%20Didac&MASSOT,%20Marie&VIGNOLLES,%20No%C3%A9mie&FAIVRE%20D'ARCIER,%20Julie&CHANCEREL,%20Emilie&rft.genre=article


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