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PDB4DNA: Implementation of DNA geometry from the Protein Data Bank (PDB) description for Geant4-DNA Monte-Carlo simulations

hal.structure.identifierLaboratoire de Physique Corpusculaire - Clermont-Ferrand [LPC]
dc.contributor.authorDELAGE, E.
hal.structure.identifierLaboratoire de Physique Corpusculaire - Clermont-Ferrand [LPC]
dc.contributor.authorPHAM, Quang Trung
hal.structure.identifierCentre d'Etudes Nucléaires de Bordeaux Gradignan [CENBG]
dc.contributor.authorKARAMITROS, M
hal.structure.identifierLaboratoire de Physique Corpusculaire - Clermont-Ferrand [LPC]
dc.contributor.authorPAYNO, H
hal.structure.identifierCentre d'Etudes Nucléaires de Bordeaux Gradignan [CENBG]
dc.contributor.authorSTEPAN, V
hal.structure.identifierCentre d'Etudes Nucléaires de Bordeaux Gradignan [CENBG]
dc.contributor.authorINCERTI, S
hal.structure.identifierLaboratoire de Physique Corpusculaire - Clermont-Ferrand [LPC]
dc.contributor.authorMAIGNE, L.
hal.structure.identifierLaboratoire de Physique Corpusculaire - Clermont-Ferrand [LPC]
dc.contributor.authorPERROT, Y
dc.date.issued2015
dc.identifier.issn0010-4655
dc.description.abstractEnThis paper describes PDB4DNA, a new Geant4 user application, based on an independent, cross-platform, free and open source C++ library, so-called PDBlib, which enables use of atomic level description of DNA molecule in Geant4 Monte Carlo particle transport simulations. For the evaluation 15 of direct damage induced on the DNA molecule by ionizing particles, the application makes use of an algorithm able to determine the closest atom in the DNA molecule to energy depositions. Both the PDB4DNA application and the PDBlib library are available as free and open source
dc.language.isoen
dc.publisherElsevier
dc.title.enPDB4DNA: Implementation of DNA geometry from the Protein Data Bank (PDB) description for Geant4-DNA Monte-Carlo simulations
dc.typeArticle de revue
dc.identifier.doi10.1016/j.cpc.2015.02.026
dc.subject.halInformatique [cs]
dc.subject.halPhysique [physics]
bordeaux.journalComputer Physics Communications
bordeaux.pageS0010465515000843
bordeaux.peerReviewedoui
hal.identifierhal-01197196
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-01197196v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Computer%20Physics%20Communications&rft.date=2015&rft.spage=S0010465515000843&rft.epage=S0010465515000843&rft.eissn=0010-4655&rft.issn=0010-4655&rft.au=DELAGE,%20E.&PHAM,%20Quang%20Trung&KARAMITROS,%20M&PAYNO,%20H&STEPAN,%20V&rft.genre=article


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