Complete genome sequence of a new poacevirus infecting wild oat (Avena fatua L.) in France
ZHANG, Zhixiang
Gannan Normal University [GNU]
Biologie du fruit et pathologie [BFP]
State Key Laboratory for Biology of Plant Diseases and Insect Pests
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Gannan Normal University [GNU]
Biologie du fruit et pathologie [BFP]
State Key Laboratory for Biology of Plant Diseases and Insect Pests
ZHANG, Zhixiang
Gannan Normal University [GNU]
Biologie du fruit et pathologie [BFP]
State Key Laboratory for Biology of Plant Diseases and Insect Pests
< Leer menos
Gannan Normal University [GNU]
Biologie du fruit et pathologie [BFP]
State Key Laboratory for Biology of Plant Diseases and Insect Pests
Idioma
en
Article de revue
Este ítem está publicado en
Archives of Virology. 2024-11-28, vol. 169, n° 12, p. 256
Springer Verlag
Resumen en inglés
Using a high-throughput sequencing (HTS) approach, we report the discovery of a new poacevirus (family Potyviridae) in symptomatic wild oat (Avena fatua L.) plants collected near Bordeaux, France, in June 2023. A nearly ...Leer más >
Using a high-throughput sequencing (HTS) approach, we report the discovery of a new poacevirus (family Potyviridae) in symptomatic wild oat (Avena fatua L.) plants collected near Bordeaux, France, in June 2023. A nearly complete genome sequence of 10,292 nucleotides (nt) was obtained. The genome encodes a large 3189-amino-acid (aa) polyprotein with all of the expected hallmarks of those of Potyviridae members. The 3' untranslated region (UTR) is 195 nt long, and the 5' UTR, whose sequence is likely missing a few terminal nucleotides despite repeated efforts at 5' RACE, is unusually long (531 nt), like that of triticum mosaic virus (TrMV). Pairwise sequence comparisons and phylogenetic analysis showed that the new virus is most closely related to TrMV and to Poaceae Liege poacevirus, a virus that was identified recently in Poaceae members in Belgium by metagenomics. The common name "wild oat poacevirus 1" (WOPV1) is proposed for this novel virus, which should be accommodated in a new species in the genus Poacevirus. Given that WOPV1 was identified in plants that were coinfected by several other viruses, no conclusions can be drawn at this stage about its potential pathogenicity.< Leer menos
Palabras clave
Séquençage à haut débit NGS
Potyviridae
Avena fatua
Avoine
Orígen
Importado de HalCentros de investigación