Statistical model choice including variable selection based on variable importance: A relevant way for biomarkers selection to predict meat tenderness
CHAVENT, Marie
Quality control and dynamic reliability [CQFD]
Institut de Mathématiques de Bordeaux [IMB]
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Quality control and dynamic reliability [CQFD]
Institut de Mathématiques de Bordeaux [IMB]
CHAVENT, Marie
Quality control and dynamic reliability [CQFD]
Institut de Mathématiques de Bordeaux [IMB]
Quality control and dynamic reliability [CQFD]
Institut de Mathématiques de Bordeaux [IMB]
SARACCO, Jerôme
Institut de Mathématiques de Bordeaux [IMB]
Quality control and dynamic reliability [CQFD]
Ecole Nationale Supérieure de Cognitique [ENSC]
< Reduce
Institut de Mathématiques de Bordeaux [IMB]
Quality control and dynamic reliability [CQFD]
Ecole Nationale Supérieure de Cognitique [ENSC]
Language
en
Article de revue
This item was published in
Scientific Reports. 2019, vol. 9, n° 1
Nature Publishing Group
English Abstract
In this paper, we describe a new computational methodology to select the best regression model to predict a numerical variable of interest Y and to select simultaneously the most interesting numerical explanatory variables ...Read more >
In this paper, we describe a new computational methodology to select the best regression model to predict a numerical variable of interest Y and to select simultaneously the most interesting numerical explanatory variables strongly linked to Y. Three regression models (parametric, semi-parametric and non-parametric) are considered and estimated by multiple linear regression, sliced inverse regression and random forests. Both the variables selection and the model choice are computational. A measure of importance based on random perturbations is calculated for each covariate. The variables above a threshold are selected. Then a learning/test samples approach is used to estimate the Mean Square Error and to determine which model (including variable selection) is the most accurate. The R package modvarsel (MODel and VARiable SELection) implements this computational approach and applies to any regression datasets. After checking the good behavior of the methodology on simulated data, the R package is used to select the proteins predictive of meat tenderness among a pool of 21 candidate proteins assayed in semitendinosus muscle from 71 young bulls. The biomarkers were selected by linear regression (the best regression model) to predict meat tenderness. These biomarkers, we confirm the predominant role of heat shock proteins and metabolic ones.Read less <
Origin
Hal imported