Mostrar el registro sencillo del ítem

Genetic architecture of leaf specialized metabolites in sessile oak (Quercus petraea)

hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorCOQ--ETCHEGARAY, Domitille
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorBERNILLON, Stéphane
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorLE PROVOST, Grégoire
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorKREMER, Antoine
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorDUCOUSSO, Alexis
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorBRACHI, Benjamin
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorLALANNE, Céline
hal.structure.identifierSILVA [SILVA]
dc.contributor.authorBONNE, Fabrice
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorMOING, Annick
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorPLOMION, Christophe
dc.date.issued2019-08-15
dc.date.conference2019-08-14
dc.description.abstractEnSpecialized metabolites contribute to plant defense against pathogens and herbivores, and to their protection against abiotic stresses (e.g. UV radiation, drought). In the context of global change, natural variation of these traits may become even more important to mitigate extreme climatic and biotic events and be a source of adaptive solutions in natural populations. Leaf specialized metabolites (LSM) were previously shown to be variable and to impact herbivore damage in populations of European white oaks. Here, we aim to describe the natural variation of LSM in sessile oaks across Europe and identify the underlying genetics to better understand the evolutionary forces shaping this variation. We sampled 225 individuals from nine provenances growing in a common garden in France and used high-throughput liquid chromatography coupled to non-targeted mass spectrometry to quantify 219 molecules. In addition, we performed whole genome sequencing of all individuals at low-coverage (~10X) to generate 1,4 millions markers (SNPs). We found that linkage disequilibrium decreased over 3 kb and that oak provenances displayed little genetic differentiation (pairwise FST<0.05). Genetic variation explained over 50% of the variation for 187 molecules and a genome-wide association study identify significant associations for 147 LSM. Overall, our results suggest that sessile oak provenances display extensive variation for LSM and that this variation has a very strong genetic component with many LSM having simple genetic architectures. On-going analyses of the signatures of natural selections and genes at these loci will help better understand the selective forces maintaining variation within provenances.
dc.language.isoen
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.subject.engenome-wide association study
dc.subject.enleaf specialized metabolites
dc.subject.enEuropean white oaks
dc.subject.enbiotic interactions
dc.subject.enprovenance trial
dc.title.enGenetic architecture of leaf specialized metabolites in sessile oak (Quercus petraea)
dc.typeCommunication dans un congrès
dc.subject.halSciences de l'environnement/Biodiversité et Ecologie
bordeaux.countryCZ
bordeaux.conference.cityPrague (Czech Republic)
bordeaux.peerReviewednon
hal.identifierhal-04144342
hal.version1
hal.invitednon
hal.proceedingsnon
hal.conference.organizerLukáš Kratochvíl
hal.conference.end2019-08-19
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-04144342v1
bordeaux.COinSctx_ver=Z39.88-2004&amp;rft_val_fmt=info:ofi/fmt:kev:mtx:journal&amp;rft.date=2019-08-15&amp;rft.au=COQ--ETCHEGARAY,%20Domitille&amp;BERNILLON,%20St%C3%A9phane&amp;LE%20PROVOST,%20Gr%C3%A9goire&amp;KREMER,%20Antoine&amp;DUCOUSSO,%20Alexis&amp;rft.genre=unknown


Archivos en el ítem

ArchivosTamañoFormatoVer

No hay archivos asociados a este ítem.

Este ítem aparece en la(s) siguiente(s) colección(ones)

Mostrar el registro sencillo del ítem