A genome-wide diversity study of grapevine rupestris stem pitting-associated virus.
hal.structure.identifier | Santé de la vigne et qualité du vin [SVQV] | |
dc.contributor.author | HILY, Jean-Michel | |
hal.structure.identifier | Santé de la vigne et qualité du vin [SVQV] | |
dc.contributor.author | BEUVE, Monique | |
hal.structure.identifier | Santé de la vigne et qualité du vin [SVQV] | |
dc.contributor.author | VIGNE, Emmanuelle | |
hal.structure.identifier | Santé de la vigne et qualité du vin [SVQV] | |
dc.contributor.author | DEMANGEAT, Gerard | |
hal.structure.identifier | Biologie du fruit et pathologie [BFP] | |
dc.contributor.author | CANDRESSE, Thierry | |
hal.structure.identifier | Santé de la vigne et qualité du vin [SVQV] | |
dc.contributor.author | LEMAIRE, Olivier | |
dc.date.issued | 2018 | |
dc.identifier.issn | 0304-8608 | |
dc.description.abstractEn | Over the last decade, many scientific disciplines have been impacted by the dawn of new sequencing techniques (HTS: high throughput sequencing). Plant pathology and more specifically virology have been greatly transformed by this 'metagenomics' paradigm shift. Such tools significantly facilitate disease diagnostics with tremendous sensitivity, providing invaluable information such as an exhaustive list of viruses being present in a sample as well as their relative concentration. In addition, many new plant viruses have been discovered. Using RNAseq technology, in silico reconstruction of complete viral genome sequences is easily attainable. This step is of importance for taxonomy, population structure analyses, phylogeography and viral evolution studies. Here, after assembling 81 new near-complete genome sequences of grapevine rupestris stem pitting-associated virus (GRSPaV), we performed a genome-wide diversity study of this ubiquitous virus of grapevine worldwide. | |
dc.language.iso | en | |
dc.publisher | Springer Verlag | |
dc.subject | GRSPaV | |
dc.subject.en | grapevine rupestris stem pitting-associated virus | |
dc.subject.en | genome wide diversity study | |
dc.title.en | A genome-wide diversity study of grapevine rupestris stem pitting-associated virus. | |
dc.type | Article de revue | |
dc.identifier.doi | 10.1007/s00705-018-3945-0 | |
dc.subject.hal | Sciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie | |
dc.subject.hal | Sciences du Vivant [q-bio]/Microbiologie et Parasitologie/Virologie | |
bordeaux.journal | Archives of Virology | |
bordeaux.page | 3105-3111 | |
bordeaux.volume | 163 | |
bordeaux.issue | 11 | |
bordeaux.peerReviewed | oui | |
hal.identifier | hal-02628821 | |
hal.version | 1 | |
hal.popular | non | |
hal.audience | Internationale | |
hal.origin.link | https://hal.archives-ouvertes.fr//hal-02628821v1 | |
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