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High-Throughput Sequencing Reveals Further Diversity of <em>Little Cherry Virus 1</em> with Implications for Diagnostics

hal.structure.identifierAristotle University of Thessaloniki
dc.contributor.authorKATSIANI, Asimina
hal.structure.identifierAristotle University of Thessaloniki
dc.contributor.authorMALIOGKA, Varvara
hal.structure.identifierAristotle University of Thessaloniki
dc.contributor.authorKATIS, Nikolaos
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorSVANELLA-DUMAS, Laurence
hal.structure.identifierInstituto Valenciano de Investigaciones Agrarias - Institut Valencià d'Investigacions Agraries - Valencian Institute for agricultural Research [IVIA]
dc.contributor.authorOLMOS, Antonio
hal.structure.identifierInstituto Valenciano de Investigaciones Agrarias - Institut Valencià d'Investigacions Agraries - Valencian Institute for agricultural Research [IVIA]
dc.contributor.authorRUIZ-GARCÍA, Ana
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorMARAIS, Armelle
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorFAURE, Chantal
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorTHEIL, Sébastien
hal.structure.identifierAristotle University of Thessaloniki
dc.contributor.authorLOTOS, Leonidas
hal.structure.identifierBiologie du fruit et pathologie [BFP]
dc.contributor.authorCANDRESSE, Thierry
dc.date.issued2018
dc.identifier.issn1999-4915
dc.description.abstractEnLittle cherry virus 1 (LChV1, Velarivirus, Closteroviridae) is a widespread pathogen of sweet or sour cherry and other Prunus species, which exhibits high genetic diversity and lacks a putative efficient transmission vector. Thus far, four distinct phylogenetic clusters of LChV1 have been described, including isolates from different Prunus species. The recent application of high throughput sequencing (HTS) technologies in fruit tree virology has facilitated the acquisition of new viral genomes and the study of virus diversity. In the present work, several new LChV1 isolates from different countries were fully sequenced using different HTS approaches. Our results reveal the presence of further genetic diversity within the LChV1 species. Interestingly, mixed infections of the same sweet cherry tree with different LChV1 variants were identified for the first time. Taken together, the high intra-host and intra-species diversities of LChV1 might affect its pathogenicity and have clear implications for its accurate diagnostics.
dc.language.isoen
dc.publisherMDPI
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.subjectLChV1
dc.subjectdiagnostics
dc.subject.enClosteroviridae
dc.subject.enintra-host variability
dc.subject.enhigh-throughput sequencing
dc.title.enHigh-Throughput Sequencing Reveals Further Diversity of <em>Little Cherry Virus 1</em> with Implications for Diagnostics
dc.typeArticle de revue
dc.identifier.doi10.3390/v10070385
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale/Phytopathologie et phytopharmacie
dc.subject.halSciences du Vivant [q-bio]/Microbiologie et Parasitologie/Virologie
bordeaux.journalViruses
bordeaux.page385
bordeaux.volume10
bordeaux.issue7
bordeaux.peerReviewedoui
hal.identifierhal-02629168
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02629168v1
bordeaux.COinSctx_ver=Z39.88-2004&amp;rft_val_fmt=info:ofi/fmt:kev:mtx:journal&amp;rft.jtitle=Viruses&amp;rft.date=2018&amp;rft.volume=10&amp;rft.issue=7&amp;rft.spage=385&amp;rft.epage=385&amp;rft.eissn=1999-4915&amp;rft.issn=1999-4915&amp;rft.au=KATSIANI,%20Asimina&amp;MALIOGKA,%20Varvara&amp;KATIS,%20Nikolaos&amp;SVANELLA-DUMAS,%20Laurence&amp;OLMOS,%20Antonio&amp;rft.genre=article


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