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Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map.

hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorTAYEH, Nadim
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorALUOME, Christelle
hal.structure.identifierGénétique Quantitative et Evolution - Le Moulon (Génétique Végétale) [GQE-Le Moulon]
dc.contributor.authorFALQUE, Matthieu
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorJACQUIN, Françoise
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorKLEIN, Anthony
hal.structure.identifierEtude du Polymorphisme des Génomes Végétaux [EPGV]
dc.contributor.authorCHAUVEAU, Aurelie
hal.structure.identifierEtude du Polymorphisme des Génomes Végétaux [EPGV]
dc.contributor.authorBERARD, Aurélie
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorHOUTIN, Hervé
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorROND-COISSIEUX, Céline
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorKREPLAK, Jonathan
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorBOUCHEROT, Karen
hal.structure.identifierInstitut National de la Recherche Agronomique [INRA]
dc.contributor.authorMARTIN, Chantal
hal.structure.identifierInstitut de Génétique, Environnement et Protection des Plantes [IGEPP]
dc.contributor.authorBARANGER, Alain
hal.structure.identifierInstitut de Génétique, Environnement et Protection des Plantes [IGEPP]
dc.contributor.authorPILET-NAYEL, Marie-Laure
hal.structure.identifierUniversity of Saskatchewan [Saskatoon, Canada] [U of S]
dc.contributor.authorWARKENTIN, Thomas D
hal.structure.identifierEtude du Polymorphisme des Génomes Végétaux [EPGV]
dc.contributor.authorBRUNEL, Dominique
hal.structure.identifierChercheur indépendant
dc.contributor.authorMARGET, Pascal
hal.structure.identifierEtude du Polymorphisme des Génomes Végétaux [EPGV]
dc.contributor.authorLE PASLIER, Marie-Christine
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorAUBERT, Gregoire
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorBURSTIN, Judith
dc.date.accessioned2022-10-12T13:33:16Z
dc.date.available2022-10-12T13:33:16Z
dc.date.issued2015
dc.identifier.issn0960-7412
dc.identifier.urihttps://oskar-bordeaux.fr/handle/20.500.12278/158283
dc.description.abstractEnSingle nucleotide polymorphism (SNP) arrays represent important genotyping tools for innovative strategies in both basic research and applied breeding. Pea is an important food, feed and sustainable crop with a large (about 4.45 Gbp) but not yet available genome sequence. In the present study, 12 pea recombinant inbred line populations were genotyped using the newly developed GenoPea 13.2K SNP Array. Individual and consensus genetic maps were built providing insights into the structure and organization of the pea genome. Largely collinear genetic maps of 3918-8503 SNPs were obtained from all mapping populations, and only two of these exhibited putative chromosomal rearrangement signatures. Similar distortion patterns in different populations were noted. A total of 12 802 transcript-derived SNP markers placed on a 15 079-marker high-density, high-resolution consensus map allowed the identification of ohnologue-rich regions within the pea genome and the localization of local duplicates. Dense syntenic networks with sequenced legume genomes were further established, paving the way for the identification of the molecular bases of important agronomic traits segregating in the mapping populations. The information gained on the structure and organization of the genome from this research will undoubtedly contribute to the understanding of the evolution of the pea genome and to its assembly. The GenoPea 13.2K SNP Array and individual and consensus genetic maps are valuable genomic tools for plant scientists to strengthen pea as a model for genetics and physiology and enhance breeding.
dc.description.sponsorshipGénomique comparative du cycle de l'azote entre M. truncatula et le pois : étude des potentialités de transfert des connaissances entre espèces modèles et cultivées - ANR-09-GENM-0026
dc.language.isoen
dc.publisherWiley
dc.subjectpolymorphisme nucléotidique simple (SNP)
dc.subjectpisum sativum
dc.subjectcarte génétique
dc.subjectmarqueur génomique
dc.subjectorganisation du génôme
dc.subject.ensynteny
dc.subject.enrecombinant inbred lines
dc.subject.enpea (Pisum sativum L.)
dc.subject.engenome structure and organization
dc.subject.enduplication
dc.subject.enpeas
dc.subject.engenetic mapping
dc.subject.enGenoPea 13.2K SNP Array
dc.subject.enconsensus genetic map
dc.subject.ensingle nucleotide polymorphism
dc.title.enDevelopment of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map.
dc.typeArticle de revue
dc.identifier.doi10.1111/tpj.13070
dc.subject.halSciences du Vivant [q-bio]/Biologie végétale
bordeaux.journalPlant Journal
bordeaux.page1257-1273
bordeaux.volume84
bordeaux.hal.laboratoriesBioGeCo (Biodiversité Gènes & Communautés) - UMR 1202*
bordeaux.issue6
bordeaux.institutionUniversité de Bordeaux
bordeaux.institutionINRAE
bordeaux.peerReviewedoui
hal.identifierhal-01509039
hal.version1
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-01509039v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Plant%20Journal&rft.date=2015&rft.volume=84&rft.issue=6&rft.spage=1257-1273&rft.epage=1257-1273&rft.eissn=0960-7412&rft.issn=0960-7412&rft.au=TAYEH,%20Nadim&ALUOME,%20Christelle&FALQUE,%20Matthieu&JACQUIN,%20Fran%C3%A7oise&KLEIN,%20Anthony&rft.genre=article


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