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Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorROUXEL, T.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorGRANDAUBERT, J.
dc.contributor.authorHANE, Jk.
hal.structure.identifierUnité de Recherche Génomique Info [URGI]
dc.contributor.authorHOEDE, Claire
dc.contributor.authorVAN DE WOUW, Angela P.
hal.structure.identifierGenoscope - Centre national de séquençage [Evry] [GENOSCOPE]
dc.contributor.authorCOULOUX, A.
hal.structure.identifierUnité de Recherche Génomique Info [URGI]
dc.contributor.authorDOMINGUEZ, V.
hal.structure.identifierGenoscope - Centre national de séquençage [Evry] [GENOSCOPE]
dc.contributor.authorANTHOUARD, Véronique
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorBALLY, P.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorBOURRAS, S.
dc.contributor.authorCOZIJNSEN, Anton J.
dc.contributor.authorCIUFFETTI, Lynda M.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorDEGRAVE, Alexandre
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorDILMAGHANI, A.
hal.structure.identifierLaboratoire de Biométrie et Biologie Evolutive - UMR 5558 [LBBE]
hal.structure.identifierBioinformatique, phylogénie et génomique évolutive [LBBE] [BPGE]
dc.contributor.authorDURET, L.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorFUDAL, I.
dc.contributor.authorGOODWIN, Stephen B.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorGOUT, L.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorGLASER, N.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorLINGLIN, J.
dc.contributor.authorKEMA, Gert H. J.
hal.structure.identifierUnité de Recherche Génomique Info [URGI]
dc.contributor.authorLAPALU, Nicolas
dc.contributor.authorLAWRENCE, Christophe B.
dc.contributor.authorMAY, K.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorMEYER, M.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorOLLIVIER, B.
hal.structure.identifierGenoscope - Centre national de séquençage [Evry] [GENOSCOPE]
dc.contributor.authorPOULAIN, J.
dc.contributor.authorSCHOCH, Conrad L.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorSIMON, A.
dc.contributor.authorSPATAFORA, Joseph W.
dc.contributor.authorSTACHOWIAK, A.
dc.contributor.authorTURGEON, B. Gillian
dc.contributor.authorTYLER, Brett M.
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorVINCENT, D.
hal.structure.identifierGenoscope - Centre national de séquençage [Evry] [GENOSCOPE]
dc.contributor.authorWEISSENBACH, J.
hal.structure.identifierUnité de Recherche Génomique Info [URGI]
dc.contributor.authorAMSELEM, J.
hal.structure.identifierUnité de Recherche Génomique Info [URGI]
dc.contributor.authorQUESNEVILLE, H.
dc.contributor.authorOLIVER, Richard P.
dc.contributor.authorWINCKER, P.
hal.structure.identifierBIOlogie et GEstion des Risques en agriculture [BIOGER]
dc.contributor.authorBALESDENT, Marie-Hélène
dc.contributor.authorHOWLETT, Barbara J.
dc.date.created2011
dc.date.issued2011
dc.identifier.issn2041-1723
dc.description.abstractEnFungi are of primary ecological, biotechnological and economic importance. Many fundamental biological processes that are shared by animals and fungi are studied in fungi due to their experimental tractability. Many fungi are pathogens or mutualists and are model systems to analyse effector genes and their mechanisms of diversification. In this study, we report the genome sequence of the phytopathogenic ascomycete Leptosphaeria maculans and characterize its repertoire of protein effectors. The L. maculans genome has an unusual bipartite structure with alternating distinct guanine and cytosine-equilibrated and adenine and thymine (AT)-rich blocks of homogenous nucleotide composition. The AT-rich blocks comprise one-third of the genome and contain effector genes and families of transposable elements, both of which are affected by repeat-induced point mutation, a fungal-specific genome defence mechanism. This genomic environment for effectors promotes rapid sequence diversification and underpins the evolutionary potential of the fungus to adapt rapidly to novel host-derived constraints.
dc.language.isoen
dc.publisherNature Publishing Group
dc.subjecttranscription factors
dc.subject.enmolecular sequence data
dc.subject.enfungi
dc.subject.enDNA transposable elements
dc.title.enEffector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
dc.typeArticle de revue
dc.identifier.doi10.1038/ncomms1189
dc.subject.halSciences du Vivant [q-bio]/Microbiologie et Parasitologie/Mycologie
bordeaux.journalNature Communications
bordeaux.page202
bordeaux.volume2
bordeaux.peerReviewedoui
hal.identifierhal-00841751
hal.version1
hal.popularnon
hal.audienceNon spécifiée
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-00841751v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Nature%20Communications&rft.date=2011&rft.volume=2&rft.spage=202&rft.epage=202&rft.eissn=2041-1723&rft.issn=2041-1723&rft.au=ROUXEL,%20T.&GRANDAUBERT,%20J.&HANE,%20Jk.&HOEDE,%20Claire&VAN%20DE%20WOUW,%20Angela%20P.&rft.genre=article


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