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A Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource

hal.structure.identifierUniversità degli Studi di Trento = University of Trento [UNITN]
dc.contributor.authorMOSCA, Elena
hal.structure.identifierCentro de Regulación Genómica [CRG]
dc.contributor.authorCRUZ, Fernando
hal.structure.identifierCentro de Regulación Genómica [CRG]
dc.contributor.authorGÓMEZ-GARRIDO, Jessica
hal.structure.identifierCentro Ricerca e Innovazione, Fondazione Edmund Mach
dc.contributor.authorBIANCO, Luca
hal.structure.identifierSwiss Federal Institute for Forest, Snow and Landscape Research WSL
dc.contributor.authorRELLSTAB, Christian
hal.structure.identifierSwiss Federal Institute for Forest, Snow and Landscape Research WSL
dc.contributor.authorBRODBECK, Sabine
hal.structure.identifierDepartment of Evolutionary Biology and Environmental Studies [IEU]
hal.structure.identifierSwiss Federal Institute for Forest, Snow and Landscape Research WSL
dc.contributor.authorCSILLÉRY, Katalin
hal.structure.identifierEcologie des Forêts Méditerranéennes [URFM]
dc.contributor.authorFADY, Bruno
hal.structure.identifierThünen Institute of Forest Genetics
dc.contributor.authorFLADUNG, Matthias
hal.structure.identifierBavarian Office for Forestry Seed and Plant Breeding
dc.contributor.authorFUSSI, Barbara
hal.structure.identifierTechnical University in Zvolen [TUZVO]
dc.contributor.authorGÖMÖRY, Dušan
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGONZALEZ MARTINEZ, Santiago
hal.structure.identifierCentro de Investigacion Forestal [INIA-CIFOR]
dc.contributor.authorGRIVET, Delphine
hal.structure.identifierCentro de Regulación Genómica [CRG]
dc.contributor.authorGUT, Marta
hal.structure.identifierUniversity of Copenhagen = Københavns Universitet [UCPH]
dc.contributor.authorHANSEN, Ole Kim
hal.structure.identifierPhilipps University
dc.contributor.authorHEER, Katrin
hal.structure.identifierMiddle East Technical University [Ankara] [METU]
dc.contributor.authorKAYA, Zeki
hal.structure.identifierRussian Academy of Sciences [Moscow] [RAS]
hal.structure.identifierSiberian Federal University [SibFU]
hal.structure.identifierDepartment of Forest Genetics and Forest Tree Breeding
dc.contributor.authorKRUTOVSKY, Konstantin V.
hal.structure.identifierThünen Institute of Forest Genetics
dc.contributor.authorKERSTEN, Birgit
hal.structure.identifierPhilipps University
dc.contributor.authorLIEPELT, Sascha
hal.structure.identifierPhilipps University
dc.contributor.authorOPGENOORTH, Lars
hal.structure.identifierSwiss Fed Res Inst WSL, Zurcherstr 111, CH-8903 Birmensdorf, Switzerland
dc.contributor.authorSPERISEN, Christoph
hal.structure.identifierMiddle East Technical University [Ankara] [METU]
dc.contributor.authorULLRICH, Kristian K.
hal.structure.identifierInstitute of Bioscience and Bioresources
dc.contributor.authorVENDRAMIN, Giovanni G.
hal.structure.identifierSlovenian Forestry Institute
dc.contributor.authorWESTERGREN, Marjana
hal.structure.identifierPUM, Fac Biol, Karl von Frisch Str 8, D-35032 Marburg, Germany
dc.contributor.authorZIEGENHAGEN, Birgit
hal.structure.identifierCentro de Regulación Genómica [CRG]
dc.contributor.authorALIOTO, Tyler
hal.structure.identifierSwiss Federal Institute for Forest, Snow and Landscape Research WSL
dc.contributor.authorGUGERLI, Felix
hal.structure.identifierFederal Research and Training Centre for Forests Natural Hazards and Landscape
dc.contributor.authorHEINZE, Berthold
hal.structure.identifierSzent István University
dc.contributor.authorHÖHN, Maria
hal.structure.identifierCentro Ricerca e Innovazione, Fondazione Edmund Mach
dc.contributor.authorTROGGIO, Michela
hal.structure.identifierDepartment of Plant Sciences
dc.contributor.authorNEALE, David B.
dc.date.issued2019
dc.identifier.issn2160-1836
dc.description.abstractEnSilver fir (Abies alba Mill.) is a keystone conifer of European montane forest ecosystems that has experienced large fluctuations in population size during during the Quaternary and, more recently, due to land-use change. To forecast the species' future distribution and survival, it is important to investigate the genetic basis of adaptation to environmental change, notably to extreme events. For this purpose, we here provide a first draft genome assembly and annotation of the silver fir genome, established through a community-based initiative. DNA obtained from haploid megagametophyte and diploid needle tissue was used to construct and sequence Illumina paired-end and mate-pair libraries, respectively, to high depth. The assembled A. alba genome sequence accounted for over 37 million scaffolds corresponding to 18.16 Gb, with a scaffold N50 of 14,051 bp. Despite the fragmented nature of the assembly, a total of 50,757 full-length genes were functionally annotated in the nuclear genome. The chloroplast genome was also assembled into a single scaffold (120,908 bp) that shows a high collinearity with both the A. koreana and A. sibirica complete chloroplast genomes. This first genome assembly of silver fir is an important genomic resource that is now publicly available in support of a new generation of research. By genome-enabling this important conifer, this resource will open the gate for new research and more precise genetic monitoring of European silver fir forests.
dc.language.isoen
dc.publisherGenetics Society of America
dc.rights.urihttp://creativecommons.org/licenses/by/
dc.subject.enAbies alba
dc.subject.enannotation
dc.subject.enconifer genome
dc.subject.engenome assembly
dc.subject.enchloroplast genome
dc.title.enA Reference Genome Sequence for the European Silver Fir (Abies alba Mill.): A Community-Generated Genomic Resource
dc.typeArticle de revue
dc.identifier.doi10.1534/g3.119.400083
dc.subject.halSciences du Vivant [q-bio]/Sciences agricoles
bordeaux.journalG3
bordeaux.page2039 - 2049
bordeaux.volume9
bordeaux.issue7
bordeaux.peerReviewedoui
hal.identifierhal-02619994
hal.version1
hal.popularnon
hal.audienceInternationale
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-02619994v1
bordeaux.COinSctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=G3&rft.date=2019&rft.volume=9&rft.issue=7&rft.spage=2039%20-%202049&rft.epage=2039%20-%202049&rft.eissn=2160-1836&rft.issn=2160-1836&rft.au=MOSCA,%20Elena&CRUZ,%20Fernando&G%C3%93MEZ-GARRIDO,%20Jessica&BIANCO,%20Luca&RELLSTAB,%20Christian&rft.genre=article


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