OLSSON, Sanna; PINOSIO, Sara; GONZÁLEZ-MARTÍNEZ, Santiago C.; ABASCAL, Federico; MAYOL, Maria; GRIVET, Delphine; VENDRAMIN, Giovanni G.

doi:10.1007/s11103-018-0742-9

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OLSSON, Sanna
Department of Forest Ecology and GeneticsForest Research Centre

PINOSIO, Sara
Istituto di Genomica Applicata [IGA]
National Research Council of Italy | Consiglio Nazionale delle Ricerche [CNR]

GONZÁLEZ-MARTÍNEZ, Santiago C.
Biodiversité, Gènes & Communautés [BioGeCo]
Sustainable Forest Management Research Institute
Centre for Ecological Research and Forestry Applications [CREAF]

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Ce document a été publié dans

Plant Molecular Biology. 2018, vol. 97, n° 4-5, p. 337–345

Springer Verlag (Germany)

Résumé en anglais

We provide novel genomic resources for Taxus baccata in the form of a reference transcriptome, SSR and SNP markers, and orthologous single-copy genes, useful for phylogenomic and population genomic applications. English yew (T. baccata) is the only European representative of the Taxaceae family, a conifer group originated in the Jurassic period. The wide extent of environmental heterogeneity within the species' range, together with its long presence in Europe, make English yew an ideal species to investigate adaptive evolution in conifers. To enlarge the genomic resources available for this species, we used Illumina short read sequencing followed by de novo assembly to build the transcriptome of English yew. In addition to a fully annotated transcriptome as well as large sets of new potential SSR and SNP markers for T. baccata, we provide a data set of orthologous single-copy genes across three Taxus species using Picea sitchensis as outgroup, and discuss ortholog uses and limitations for phylogenomic and population genomic applications.< Réduire

Mots clés

Phylogenomics

Transcriptome

Mots clés en anglais

Orthologous genes

SNP

SSR