PROTICdb: a web-based application to store, track, query, and compare plant proteome data
| hal.structure.identifier | Centre de Bioinformatique de Bordeaux [CBIB] | |
| dc.contributor.author | FERRY DUMAZET, Hélène | |
| hal.structure.identifier | Génétique Végétale [GV] | |
| dc.contributor.author | HOUEL, Gwenn | |
| hal.structure.identifier | Génétique Végétale [GV] | |
| dc.contributor.author | MONTALENT, Pierre | |
| hal.structure.identifier | Génétique Végétale [GV] | |
| dc.contributor.author | MOREAU, Luc | |
| hal.structure.identifier | Génétique Végétale [GV] | |
| dc.contributor.author | LANGELLA, Olivier | |
| hal.structure.identifier | Génétique Végétale [GV] | |
| dc.contributor.author | NÉGRONI, Luc | |
| hal.structure.identifier | Génétique Végétale [GV] | |
| dc.contributor.author | VINCENT, Delphine | |
| hal.structure.identifier | Biodiversité, Gènes et Ecosystèmes [BioGeCo] | |
| dc.contributor.author | LALANNE, Céline | |
| hal.structure.identifier | Université de Bordeaux Ségalen [Bordeaux 2] | |
| dc.contributor.author | DE DARUVAR, Antoine | |
| hal.structure.identifier | Biodiversité, Gènes et Ecosystèmes [BioGeCo] | |
| dc.contributor.author | PLOMION, Christophe | |
| hal.structure.identifier | Génétique Végétale [GV] | |
| dc.contributor.author | ZIVY, Michel | |
| hal.structure.identifier | Génétique Végétale [GV] | |
| dc.contributor.author | JOETS, Johann | |
| dc.date.issued | 2005 | |
| dc.identifier.issn | 1615-9853 | |
| dc.description.abstractEn | PROTICdb is a web-based application, mainly designed to store and analyze plant proteome data obtained by two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) and mass spectrometry (MS). The purposes of PROTICdb are (i) to store, track, and query information related to proteomic experiments, i.e., from tissue sampling to protein identification and quantitative measurements, and (ii) to integrate information from the user's own expertise and other sources into a knowledge base, used to support data interpretation (e.g., for the determination of allelic variants or products of post-translational modifications). Data insertion into the relational database of PROTICdb is achieved either by uploading outputs of image analysis and MS identification software, or by filling web forms. 2-D PAGE annotated maps can be displayed, queried, and compared through a graphical interface. Links to external databases are also available. Quantitative data can be easily exported in a tabulated format for statistical analyses. PROTICdb is based on the Oracle or the PostgreSQL Database Management System | |
| dc.language.iso | en | |
| dc.publisher | Wiley-VCH Verlag | |
| dc.subject | COMPARATIVE PROTEOMICS | |
| dc.subject | BASE DE DONNEES | |
| dc.subject.en | DATABASE | |
| dc.subject.en | MASS SPECTROMETRY | |
| dc.subject.en | TWO DIMENSIONAL GEL ELECTROPHORESIS | |
| dc.subject.en | ELECTROPHORESE BIDIMENTIONELLE | |
| dc.subject.en | WEB | |
| dc.title.en | PROTICdb: a web-based application to store, track, query, and compare plant proteome data | |
| dc.type | Article de revue | |
| dc.identifier.doi | 10.1002/pmic.200401111 | |
| dc.subject.hal | Sciences du Vivant [q-bio]/Biochimie, Biologie Moléculaire | |
| bordeaux.journal | Proteomics | |
| bordeaux.page | 2069-2081 | |
| bordeaux.volume | 5 | |
| bordeaux.issue | 8 | |
| bordeaux.peerReviewed | oui | |
| hal.identifier | hal-02676901 | |
| hal.version | 1 | |
| hal.popular | non | |
| hal.audience | Internationale | |
| hal.origin.link | https://hal.archives-ouvertes.fr//hal-02676901v1 | |
| bordeaux.COinS | ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Proteomics&rft.date=2005&rft.volume=5&rft.issue=8&rft.spage=2069-2081&rft.epage=2069-2081&rft.eissn=1615-9853&rft.issn=1615-9853&rft.au=FERRY%20DUMAZET,%20H%C3%A9l%C3%A8ne&HOUEL,%20Gwenn&MONTALENT,%20Pierre&MOREAU,%20Luc&LANGELLA,%20Olivier&rft.genre=article |
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