High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries
Langue
en
Article de revue
Ce document a été publié dans
Molecular Ecology Resources. 2011, vol. 11, n° 4, p. 638-644
Wiley/Blackwell
Résumé en anglais
Microsatellites (or SSRs: simple sequence repeats) are among the most frequently used DNA markers in many areas of research. The use of microsatellite markers is limited by the difficulties involved in their de novo ...Lire la suite >
Microsatellites (or SSRs: simple sequence repeats) are among the most frequently used DNA markers in many areas of research. The use of microsatellite markers is limited by the difficulties involved in their de novo isolation from species for which no genomic resources are available. We describe here a high-throughput method for isolating microsatellite markers based on coupling multiplex microsatellite enrichment and next-generation sequencing on 454 GS-FLX Titanium platforms. The procedure was calibrated on a model species (Apis mellifera) and validated on 13 other species from various taxonomic groups (animals, plants and fungi), including taxa for which severe difficulties were previously encountered using traditional methods. We obtained from 11 497 to 34 483 sequences depending on the species and the number of detected microsatellite loci ranged from 199 to 5791. We thus demonstrated that this procedure can be readily and successfully applied to a large variety of taxonomic groups, at much lower cost than would have been possible with traditional protocols. This method is expected to speed up the acquisition of high-quality genetic markers for nonmodel organisms.< Réduire
Mots clés
marqueur microsatellite
génotypage
pyroséquençage
banque d'adn
taxonomie
pcr
marqueur génétique
Mots clés en anglais
microsatellite repeats
primer design
pyrosequencing
enriched library
genetic marker
genotyping
microsatellite isolation
next-generation sequencing
taxonomy
Origine
Importé de halUnités de recherche