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hal.structure.identifierÉvolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 [Evo-Eco-Paléo (EEP)]
dc.contributor.authorDUBART, Maxime
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
dc.contributor.authorALONSO, Pascal
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorBARROSO-BERGADA, Didac
hal.structure.identifierInstitut de Systématique, Evolution, Biodiversité [ISYEB ]
dc.contributor.authorBECKER, Nathalie
hal.structure.identifierCentre d’Ecologie Fonctionnelle et Evolutive [CEFE]
dc.contributor.authorBETHUNE, Kevin
hal.structure.identifierAgroécologie [Dijon]
dc.contributor.authorBOHAN, David
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorBOURY, Christophe
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorCAMBON, Marine
hal.structure.identifierInstitut de Génétique, Environnement et Protection des Plantes [IGEPP]
dc.contributor.authorCANARD, Elsa
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorCHANCEREL, Emilie
hal.structure.identifierMathématiques et Informatique Appliquées [MIA Paris-Saclay]
dc.contributor.authorCHIQUET, Julien
hal.structure.identifierCentre d’Ecologie Fonctionnelle et Evolutive [CEFE]
dc.contributor.authorDAVID, Patrice
hal.structure.identifierÉvolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 [Evo-Eco-Paléo (EEP)]
hal.structure.identifierUniversity of California [Riverside] [UC Riverside]
dc.contributor.authorDE MANINCOR, Natasha
hal.structure.identifierMathématiques et Informatique Appliquées [MIA Paris-Saclay]
dc.contributor.authorDONNET, Sophie
hal.structure.identifierÉvolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 [Evo-Eco-Paléo (EEP)]
dc.contributor.authorDUPUTIÉ, Anne
hal.structure.identifierPeuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
hal.structure.identifierCentre de Biologie pour la Gestion des Populations [UMR CBGP]
dc.contributor.authorFACON, Benoît
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorGUICHOUX, Erwan
hal.structure.identifierMathématiques et Informatique Appliquées [MIA Paris-Saclay]
dc.contributor.authorLE MINH, Tâm
hal.structure.identifierInstitut de Génétique, Environnement et Protection des Plantes [IGEPP]
dc.contributor.authorORTIZ-MARTÍNEZ, Sebastián
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorPIOUCEAU, Lucie
hal.structure.identifierInstitut de Génétique, Environnement et Protection des Plantes [IGEPP]
dc.contributor.authorSACCO-MARTRET DE PRÉVILLE, Ambre
hal.structure.identifierInstitut de Génétique, Environnement et Protection des Plantes [IGEPP]
dc.contributor.authorPLANTEGENEST, Manuel
hal.structure.identifierÉvolution, Écologie et Paléontologie (Evo-Eco-Paleo) - UMR 8198 [Evo-Eco-Paléo (EEP)]
dc.contributor.authorPOUX, Céline
hal.structure.identifierPeuplements végétaux et bioagresseurs en milieu tropical [UMR PVBMT]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
hal.structure.identifierInstitut de Systématique, Evolution, Biodiversité [ISYEB ]
dc.contributor.authorRAVIGNÉ, Virginie
hal.structure.identifierMathématiques et Informatique Appliquées [MIA Paris-Saclay]
hal.structure.identifierLaboratoire de Probabilités, Statistique et Modélisation [LPSM (UMR_8001)]
dc.contributor.authorROBIN, Stéphane
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorTRILLAT, Marine
hal.structure.identifierBiodiversité, Gènes & Communautés [BioGeCo]
dc.contributor.authorVACHER, Corinne
hal.structure.identifierPlant Health Institute of Montpellier [UMR PHIM]
hal.structure.identifierDépartement Systèmes Biologiques [Cirad-BIOS]
dc.contributor.authorVERNIÈRE, Christian
hal.structure.identifierCentre d’Infection et d’Immunité de Lille - INSERM U 1019 - UMR 9017 - UMR 8204 [CIIL]
dc.contributor.authorMASSOL, François
dc.date.accessioned2022-10-12T12:02:13Z
dc.date.available2022-10-12T12:02:13Z
dc.date.issued2021
dc.identifier.isbn978-0-323-91503-8
dc.identifier.urihttps://oskar-bordeaux.fr/handle/20.500.12278/155664
dc.description.abstractEnBiomonitoring ecosystems is necessary in order to evaluate risks and to efficiently manage ecosystems and their associated services. Agrosystems are the target of multiple stressors that can affect many species through effects cascading along food webs. However, classic biomonitoring, focused on species diversity or indicator species, might be a poor predictor of the risk of such whole-ecosystem perturbations. Thanks to high-throughput sequencing methods, however, it might be possible to obtain sufficient information about entire ecological communities to infer the functioning of their associated interaction networks, and thus monitor more closely the risk of the collapse of entire food webs due to external stressors.In the course of the ‘next-generation biomonitoring’ project, we collectively sought to experiment with this idea of inferring ecological networks on the basis of metabarcoding information gathered on different systems. We here give an overview of issues and preliminary results associated with this endeavour and highlight the main difficulties that such next-generation biomonitoring is still facing. Going from sampling protocols up to methods for comparing inferred networks, through biomolecular, bioinformatic, and network inference, we review all steps of the process, with a view towards generality and transferability towards other systems.
dc.description.sponsorshipBiosurveillance Next-Gen des changements dans la structure et le fonctionnement des écosystèmes - ANR-17-CE32-0011
dc.description.sponsorshipAdaptation et résilience des réseaux écologiques spatialisés face aux changements d'origine humaine
dc.language.isoen
dc.publisherElsevier
dc.source.titleThe Future of Agricultural Landscapes, Part III
dc.subject.enEcological networks
dc.subject.enNetwork inference
dc.subject.enNext-generation biomonitoring
dc.subject.enHigh throughput sequencing
dc.subject.enLogic-based machine learning
dc.subject.enNext-generation sequencing
dc.subject.enMicrobiomese
dc.subject.enDNA
dc.title.enCoupling ecological network analysis with high-throughput sequencing-based surveys: Lessons from the next-generation biomonitoring project
dc.typeChapitre d'ouvrage
dc.identifier.doi10.1016/bs.aecr.2021.10.007
dc.subject.halSciences de l'environnement/Biodiversité et Ecologie
bordeaux.page367-430
bordeaux.volume65
bordeaux.hal.laboratoriesBioGeCo (Biodiversité Gènes & Communautés) - UMR 1202*
bordeaux.institutionUniversité de Bordeaux
bordeaux.institutionINRAE
hal.identifierhal-03689869
hal.version1
hal.origin.linkhttps://hal.archives-ouvertes.fr//hal-03689869v1
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